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inflation value usage
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andrewjpage committed May 21, 2017
1 parent ec1793e commit 2212df8
Showing 1 changed file with 2 additions and 1 deletion.
3 changes: 2 additions & 1 deletion lib/Bio/Roary/CommandLine/Roary.pm
Original file line number Diff line number Diff line change
Expand Up @@ -101,7 +101,7 @@ sub BUILD {
'k|kraken_db=s' => \$kraken_db,
'w|version' => \$cmd_version,
'a|check_dependancies' => \$check_dependancies,
'inflation_value=f' => \$inflation_value,
'iv|inflation_value=f' => \$inflation_value,
'h|help' => \$help,
);

Expand Down Expand Up @@ -347,6 +347,7 @@ Options: -p INT number of threads [1]
-v verbose output to STDOUT
-w print version and exit
-y add gene inference information to spreadsheet, doesnt work with -e
-iv STR Change the MCL inflation value [1.5]
-h this help message
Example: Quickly generate a core gene alignment using 8 threads
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