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Reads can also be in FASTQ format
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@martinghunt
martinghunt committed May 20, 2015
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Expand Up @@ -33,7 +33,7 @@ If the tests all pass, install:
Usage
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The input is an assembly in FASTA format and corrected long reads in FASTA format. To run:
The input is an assembly in FASTA format and corrected long reads in FASTA or FASTQ format. To run:

circlator all assembly.fasta corrected_reads.fasta output_directory

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