Code

Code cleaning#68

Code

Merged

sangttruong merged 50 commits intomastersangttruong/nonmyopia:masterfrom code-cleaningsangttruong/nonmyopia:code-cleaningCopy head branch name to clipboardDec 17, 2024

+5,354-610

Commits

Commits on Sep 5, 2024

• Fix bugs for multi sequence optimization

  martinakaduc

  committed
  0b324dd

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Commits on Sep 10, 2024

• Add SFT pretraining for Policy

  martinakaduc

  committed
  66b0564

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• Fix bugs of querying

  martinakaduc

  committed
  aebaa26

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Commits on Sep 11, 2024

• Adjust configs for HES and create configs for other acqfs

  martinakaduc

  committed
  952f206

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Commits on Sep 12, 2024

• Fix bugs when running with other acqfs

  martinakaduc

  committed
  4465ae0

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• Adjust configs for PPO and SFT

  martinakaduc

  committed
  1ac0c0d

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• Refine datasets for training SFT

  martinakaduc

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  7c2fb1a

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• Fix small bugs of data caching

  martinakaduc

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  d6158aa

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• Adjust SFT configurations

  martinakaduc

  committed
  b3d8bfe

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Commits on Sep 13, 2024

• Support for continue training

  martinakaduc

  committed
  7cdfd91

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Commits on Sep 18, 2024

• Fix continuous bugs

  martinakaduc

  committed
  2fe33f0

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• Fix bugs for discretized envs

  martinakaduc

  committed
  c66ca08

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Commits on Sep 19, 2024

• Fix bugs for HES-TS

  martinakaduc

  committed
  497c917

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• Fix missing default hyperparameter values

  martinakaduc

  committed
  1dcb5d4

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• Fix bugs for myopic acqfs

  martinakaduc

  committed
  59ef148

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• Fix bugs of other acqfs

  martinakaduc

  committed
  093a324

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Commits on Sep 20, 2024

• Fix bugs for high dimensional envs

  martinakaduc

  committed
  f2d8842

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Commits on Sep 22, 2024

• Fix discretized envs

  martinakaduc

  committed
  839853c

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• Update drawing code

  martinakaduc

  committed
  3f3de34

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• Merge branch '63-fix-synthetic' of github.com:sangttruong/nonmyopia into 63-fix-synthetic

  martinakaduc

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  bde8429

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Commits on Sep 23, 2024

• Fix amortization bugs

  martinakaduc

  committed
  21c6f91

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Commits on Sep 25, 2024

• Fix for wrongly fitting GP

  martinakaduc

  committed
  67f6ce9

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• Fix metric computation

  martinakaduc

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  b535343

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Commits on Sep 26, 2024

• Update MSL config

  

  Duc Nguyen

  committed
  750e12b

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Commits on Sep 29, 2024

• Update code

  martinakaduc

  committed
  f3b1e4e

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Commits on Sep 30, 2024

• Update

  martinakaduc

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  50e5f82

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Commits on Oct 1, 2024

• Fix acqf

  martinakaduc

  committed
  a3918cb

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• Add configs

  martinakaduc

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  b32115e

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• Add configs

  martinakaduc

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  819afb6

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Commits on Oct 3, 2024

• Update final code

  martinakaduc

  committed
  4936e23

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• Update latest synthetic code

  martinakaduc

  committed
  cb93b5a

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• Merge branch '63-fix-synthetic' of github.com:sangttruong/nonmyopia into 63-fix-synthetic

  martinakaduc

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  6d29c4d

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• Fix code and add figures

  martinakaduc

  committed
  2adc833

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• Merge remote-tracking branch 'origin/master' into 63-fix-synthetic

  martinakaduc

  committed
  77ebcf7

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Commits on Nov 2, 2024

• Revise code to support other proteins, other synthetic functions

  martinakaduc

  committed
  c4d1f73

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• Update configs

  martinakaduc

  committed
  cee133c

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• Fix config bugs

  martinakaduc

  committed
  f78a412

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• Fix bugs

  martinakaduc

  committed
  ebaee63

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• Update new protein

  martinakaduc

  committed
  6e9ae88

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Commits on Nov 15, 2024

• Update code and add configs for more experiments

  martinakaduc

  committed
  7b848eb

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Commits on Dec 16, 2024

• Latest code for sequence design experiments

  martinakaduc

  committed
  b2bd782

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• Fix rotation bugs

  martinakaduc

  committed
  a20a172

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• Latest code

  martinakaduc

  committed
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• Revise frontpage images

  martinakaduc

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  ff58135

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• Add ablation study configs

  martinakaduc

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  fc8b493

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• Add scripts and configs

  martinakaduc

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  939ea79

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• Move testcode to test folder

  martinakaduc

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  0241e3b

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• Update gitignore

  martinakaduc

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  c8299f0

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Commits on Dec 17, 2024

• Merge remote-tracking branch 'origin' into code-cleaning

  martinakaduc

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• Format code with UFMT

  martinakaduc

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