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pairwise chi-square formulas must be controlled
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| on: [push, pull_request] | ||
|
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| name: R-CMD-check | ||
|
|
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| jobs: | ||
| R-CMD-check: | ||
| runs-on: macOS-latest | ||
| steps: | ||
| - uses: actions/checkout@v1 | ||
| - uses: r-lib/actions/setup-r@master | ||
| - name: Install dependencies | ||
| run: Rscript -e "install.packages(c('remotes', 'rcmdcheck'))" -e "remotes::install_deps(dependencies = TRUE)" | ||
| - name: Check | ||
| run: Rscript -e "rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'error')" | ||
| # on: [push, pull_request] | ||
| # | ||
| # name: R-CMD-check | ||
| # | ||
| # jobs: | ||
| # R-CMD-check: | ||
| # runs-on: macOS-latest | ||
| # steps: | ||
| # - uses: actions/checkout@v1 | ||
| # - uses: r-lib/actions/setup-r@master | ||
| # - name: Install dependencies | ||
| # run: Rscript -e "install.packages(c('remotes', 'rcmdcheck'))" -e "remotes::install_deps(dependencies = TRUE)" | ||
| # - name: Check | ||
| # run: Rscript -e "rcmdcheck::rcmdcheck(args = '--no-manual', error_on = 'error')" |
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| @@ -1,23 +1,23 @@ | ||
| on: | ||
| push: | ||
| paths: | ||
| - README.Rmd | ||
|
|
||
| name: Render README | ||
|
|
||
| jobs: | ||
| render: | ||
| name: Render README | ||
| runs-on: macos-latest | ||
| steps: | ||
| - uses: actions/checkout@v1 | ||
| - uses: r-lib/actions/setup-r@v1 | ||
| - uses: r-lib/actions/setup-pandoc@v1 | ||
| - name: Install rmarkdown | ||
| run: Rscript -e "install.packages('rmarkdown')" | ||
| - name: Render README | ||
| run: Rscript -e "rmarkdown::render('README.Rmd')" | ||
| - name: Commit results | ||
| run: | | ||
| git commit examples/README.md -m 'Re-build README.Rmd' || echo "No changes to commit" | ||
| git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{ github.ref }} || echo "No changes to commit" | ||
| # on: | ||
| # push: | ||
| # paths: | ||
| # - README.Rmd | ||
| # | ||
| # name: Render README | ||
| # | ||
| # jobs: | ||
| # render: | ||
| # name: Render README | ||
| # runs-on: macos-latest | ||
| # steps: | ||
| # - uses: actions/checkout@v1 | ||
| # - uses: r-lib/actions/setup-r@v1 | ||
| # - uses: r-lib/actions/setup-pandoc@v1 | ||
| # - name: Install rmarkdown | ||
| # run: Rscript -e "install.packages('rmarkdown')" | ||
| # - name: Render README | ||
| # run: Rscript -e "rmarkdown::render('README.Rmd')" | ||
| # - name: Commit results | ||
| # run: | | ||
| # git commit examples/README.md -m 'Re-build README.Rmd' || echo "No changes to commit" | ||
| # git push https://${{github.actor}}:${{secrets.GITHUB_TOKEN}}@github.com/${{github.repository}}.git HEAD:${{ github.ref }} || echo "No changes to commit" |
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| # # OS: Linux + macOS ------------------------------------------------------------ | ||
| # # tic documentation: https://docs.ropensci.org/tic/dev/ | ||
| # | ||
| # matrix: | ||
| # include: | ||
| # - os: osx | ||
| # r: release | ||
| # - os: linux | ||
| # r: release | ||
| # env: | ||
| # - BUILD_PKGDOWN=true | ||
| # | ||
| # # meta ------------------------------------------------------------------------- | ||
| # language: r | ||
| # cache: | ||
| # - packages | ||
| # - $HOME/.ccache | ||
| # - $HOME/Library/Caches/Homebrew | ||
| # latex: false | ||
| # | ||
| # # environment variables -------------------------------------------------------- | ||
| # | ||
| # env: | ||
| # global: | ||
| # - MAKEFLAGS="-j 2" | ||
| # | ||
| # # Stages ----------------------------------------------------------------------- | ||
| # | ||
| # before_install: | ||
| # - if [ "${TRAVIS_OS_NAME}" == "osx" ]; then brew install ccache; fi | ||
| # - if [ "${TRAVIS_OS_NAME}" == "osx" ]; then export PATH="/usr/local/opt/ccache/libexec:$PATH"; fi | ||
| # - echo -e "options(Ncpus = 8, repos = structure(c(CRAN = 'https://cloud.r-project.org/')))" > $HOME/.Rprofile | ||
| # - mkdir -p $HOME/.R && echo -e 'CXX_STD = CXX14\n\nCC=ccache gcc -std=gnu99\nCXX=ccache g++\nCXX11=ccache g++ -std=gnu99\nCXX14=ccache g++ -std=gnu99\nC11=ccache g++\nC14=ccache g++\nFC=ccache gfortran\nF77=ccache gfortran' > $HOME/.R/Makevars | ||
| # - mkdir -p $HOME/.ccache && echo -e 'max_size = 5.0G\nsloppiness = include_file_ctime\nhash_dir=false' > $HOME/.ccache/ccache.conf | ||
| # - R -q -e 'if (!requireNamespace("remotes")) install.packages("remotes")' | ||
| # - R -q -e 'if (getRversion() < "3.2" && !requireNamespace("curl")) install.packages("curl")' | ||
| # - R -q -e 'remotes::install_github("ropensci/tic", upgrade = "always"); print(tic::dsl_load()); tic::prepare_all_stages()' | ||
| # - R -q -e 'tic::before_install()' | ||
| # install: | ||
| # - R -q -e 'tic::install()' | ||
| # before_script: R -q -e 'tic::before_script()' | ||
| # script: R -q -e 'tic::script()' | ||
| # after_success: R -q -e 'tic::after_success()' | ||
| # after_failure: R -q -e 'tic::after_failure()' | ||
| # before_deploy: R -q -e 'tic::before_deploy()' | ||
| # deploy: | ||
| # provider: script | ||
| # script: R -q -e 'tic::deploy()' | ||
| # on: | ||
| # all_branches: true | ||
| # after_deploy: R -q -e 'tic::after_deploy()' | ||
| # after_script: R -q -e 'tic::after_script()' | ||
| # | ||
| # # Custom user code ------------------------------------------------------------- |
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| # # tic documentation: https://docs.ropensci.org/tic/dev/ | ||
| # | ||
| # # Download script file from GitHub | ||
| # init: | ||
| # ps: | | ||
| # $ErrorActionPreference = "Stop" | ||
| # Invoke-WebRequest http://raw.github.com/krlmlr/r-appveyor/master/scripts/appveyor-tool.ps1 -OutFile "..\appveyor-tool.ps1" | ||
| # Import-Module '..\appveyor-tool.ps1' | ||
| # | ||
| # install: | ||
| # - ps: Bootstrap | ||
| # - cmd: Rscript -e "writeLines('options(repos = \'https://cloud.r-project.org\')', '~/.Rprofile')" | ||
| # - cmd: Rscript -e "getOption('repos')" | ||
| # - cmd: Rscript -e "if (!requireNamespace('remotes')) install.packages('remotes', type = 'binary')" | ||
| # - cmd: Rscript -e "if (getRversion() < '3.2' && !requireNamespace('curl')) install.packages('curl', type = 'binary')" | ||
| # - cmd: Rscript -e "options(pkgType = 'binary'); remotes::install_github('ropensci/tic', upgrade = 'always'); print(tic::dsl_load()); tic::prepare_all_stages()" | ||
| # | ||
| # before_build: Rscript -e "tic::before_install()" | ||
| # build_script: Rscript -e "tic::install()" | ||
| # after_build: Rscript -e "tic::after_install()" | ||
| # before_test: Rscript -e "tic::before_script()" | ||
| # test_script: Rscript -e "tic::script()" | ||
| # on_success: Rscript -e "try(tic::after_success(), silent = TRUE)" | ||
| # on_failure: Rscript -e "tic::after_failure()" | ||
| # before_deploy: Rscript -e "tic::before_deploy()" | ||
| # deploy_script: Rscript -e "tic::deploy()" | ||
| # after_deploy: Rscript -e "tic::after_deploy()" | ||
| # on_finish: Rscript -e "tic::after_script()" | ||
| # # Custom user code ------------------------------------------------------------- |
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| # comment: false | ||
| # | ||
| # coverage: | ||
| # status: | ||
| # project: | ||
| # default: | ||
| # target: auto | ||
| # threshold: 1% | ||
| # patch: | ||
| # default: | ||
| # target: auto | ||
| # threshold: 1% |
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