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Clean up VolumeTimeseriesDemo
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kephale committed Sep 16, 2020
1 parent 72f31ef commit d872559
Showing 1 changed file with 0 additions and 28 deletions.
28 changes: 0 additions & 28 deletions src/main/java/sc/iview/commands/demo/VolumeTimeseriesDemo.java
Original file line number Diff line number Diff line change
Expand Up @@ -29,40 +29,24 @@
package sc.iview.commands.demo;

import bdv.util.BdvFunctions;
import graphics.scenery.Node;
import graphics.scenery.numerics.OpenSimplexNoise;
import graphics.scenery.volumes.Volume;
import ij.IJ;
import io.scif.services.DatasetIOService;
import net.imagej.Dataset;
import net.imagej.ImageJ;
import net.imagej.mesh.Mesh;
import net.imagej.ops.OpService;
import net.imagej.ops.geom.geom3d.mesh.BitTypeVertexInterpolator;
import net.imglib2.*;
import net.imglib2.img.Img;
import net.imglib2.img.array.ArrayImgs;
import net.imglib2.img.display.imagej.ImageJFunctions;
import net.imglib2.position.FunctionRandomAccessible;
import net.imglib2.type.Type;
import net.imglib2.type.logic.BitType;
import net.imglib2.type.numeric.integer.UnsignedByteType;
import net.imglib2.view.Views;
import org.joml.Vector3f;
import org.scijava.command.Command;
import org.scijava.command.CommandService;
import org.scijava.display.DisplayService;
import org.scijava.io.IOService;
import org.scijava.log.LogService;
import org.scijava.plugin.Menu;
import org.scijava.plugin.Parameter;
import org.scijava.plugin.Plugin;
import org.scijava.ui.UIService;
import sc.iview.SciView;
import sc.iview.process.MeshConverter;

import java.io.File;
import java.io.IOException;
import java.util.HashMap;
import java.util.Random;
import java.util.function.BiConsumer;
Expand Down Expand Up @@ -96,18 +80,6 @@ public class VolumeTimeseriesDemo implements Command {
public void run() {
final RandomAccessibleInterval<UnsignedByteType> dataset = makeDataset();

// try {
// ioService.save(
// ImageJFunctions.wrap(dataset,"test"),
// "/home/kharrington/Data/sciview/test_volumetimeseries.tif");
// } catch (IOException e) {
// e.printStackTrace();
// }

IJ.saveAsTiff(
ImageJFunctions.wrap(dataset,"test"),
"/home/kharrington/Data/sciview/test_volumetimeseries.tif");

//ImageJFunctions.wrap(dataset, "test");
BdvFunctions.show(dataset, "test");

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