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Scholl Lab

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  1. vcf-filtering vcf-filtering Public

    A collection of scripts for filtering annotated variant call format files

    Shell 4 1

  2. merge-multisample-vcf merge-multisample-vcf Public

    Python 1

  3. apa-sequencing apa-sequencing Public

    Code for the aldosterone-producing adenoma sequencing project

    Python

  4. gckd_multisample_vcf gckd_multisample_vcf Public

    Commands to merge and annotate GCKD single sample VCFs

    Shell

  5. sm-vcf-annotation sm-vcf-annotation Public

    Snakemake scripts to annotate VCF files using SnpEff and SnpSift

    Python

  6. command-chest command-chest Public

    A collection of assorted tools, command lines and scripts

    Python

Repositories

Showing 10 of 10 repositories
  • variantcentrifuge Public

    A pipeline for filtering annotated variant call format files

    scholl-lab/variantcentrifuge’s past year of commit activity
    Python 0 MIT 0 9 0 Updated Dec 19, 2024
  • vcf-filtering Public

    A collection of scripts for filtering annotated variant call format files

    scholl-lab/vcf-filtering’s past year of commit activity
    Shell 4 MIT 1 34 0 Updated Dec 17, 2024
  • sm-vcf-annotation Public

    Snakemake scripts to annotate VCF files using SnpEff and SnpSift

    scholl-lab/sm-vcf-annotation’s past year of commit activity
    Python 0 MIT 0 4 0 Updated Dec 12, 2024
  • merge-multisample-vcf Public
    scholl-lab/merge-multisample-vcf’s past year of commit activity
    Python 1 0 3 0 Updated Dec 1, 2024
  • apa-sequencing Public

    Code for the aldosterone-producing adenoma sequencing project

    scholl-lab/apa-sequencing’s past year of commit activity
    Python 0 MIT 0 12 0 Updated Sep 5, 2024
  • plasmicheck Public

    Detect and quantify plasmid DNA contamination in sequencing data

    scholl-lab/plasmicheck’s past year of commit activity
    Python 0 MIT 0 32 0 Updated Aug 21, 2024
  • sm-calling Public
    scholl-lab/sm-calling’s past year of commit activity
    Python 0 MIT 0 9 0 Updated Jul 18, 2024
  • sm-alignment Public
    scholl-lab/sm-alignment’s past year of commit activity
    Python 0 MIT 0 16 0 Updated May 30, 2024
  • command-chest Public

    A collection of assorted tools, command lines and scripts

    scholl-lab/command-chest’s past year of commit activity
    Python 0 MIT 0 2 0 Updated Dec 7, 2023
  • gckd_multisample_vcf Public

    Commands to merge and annotate GCKD single sample VCFs

    scholl-lab/gckd_multisample_vcf’s past year of commit activity
    Shell 0 MIT 0 3 0 Updated Oct 30, 2023

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