🔒 🤖 CI Update lock files for main CI build(s) 🔒 🤖

[scikit-learn-bot]

Update lock files.

Note

If the CI tasks fail, create a new branch based on this PR and add the required fixes to that branch.

[github-actions]

✔️ Linting Passed

All linting checks passed. Your pull request is in excellent shape! ☀️

_{Generated for commit: 5371a23. Link to the linter CI: here}

[lesteve]

Hmmm maybe an OpenML issue/glitch or mismatch with CircleCI locally cached file build log:

    Unexpected failing examples (2):
    
        ../examples/miscellaneous/plot_display_object_visualization.py failed leaving traceback:
    
        Traceback (most recent call last):
          File "/home/circleci/project/examples/miscellaneous/plot_display_object_visualization.py", line 35, in <module>
            X, y = fetch_openml(data_id=1464, return_X_y=True)
                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/utils/_param_validation.py", line 218, in wrapper
            return func(*args, **kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/datasets/_openml.py", line 1033, in fetch_openml
            data_description = _get_data_description_by_id(data_id, data_home)
                               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/datasets/_openml.py", line 368, in _get_data_description_by_id
            json_data = _get_json_content_from_openml_api(
                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/datasets/_openml.py", line 259, in _get_json_content_from_openml_api
            raise OpenMLError(error_message)
        sklearn.datasets._openml.OpenMLError: Dataset with data_id 1464 not found.
    
        ../examples/model_selection/plot_tuned_decision_threshold.py failed leaving traceback:
    
        Traceback (most recent call last):
          File "/home/circleci/project/examples/model_selection/plot_tuned_decision_threshold.py", line 29, in <module>
            diabetes = fetch_openml(data_id=37, as_frame=True, parser="pandas")
                       ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/utils/_param_validation.py", line 218, in wrapper
            return func(*args, **kwargs)
                   ^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/datasets/_openml.py", line 1135, in fetch_openml
            bunch = _download_data_to_bunch(
                    ^^^^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/datasets/_openml.py", line 689, in _download_data_to_bunch
            X, y, frame, categories = _retry_with_clean_cache(
                                      ^^^^^^^^^^^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/datasets/_openml.py", line 78, in wrapper
            return f(*args, **kw)
                   ^^^^^^^^^^^^^^
          File "/home/circleci/project/sklearn/datasets/_openml.py", line 532, in _load_arff_response
            raise ValueError(
        ValueError: md5 checksum of local file for https://api.openml.org/data/v1/download/37/diabetes.arff does not match description: expected: 3cbaa3e54586aa88cf6aacb4033e4470 but got 87899c4863968a25a3dcd6f241ee91c3. Downloaded file could have been modified / corrupted, clean cache and retry...
    
    -------------------------------------------------------------------------------

I can not reproduce locally.

[lesteve]

Oh well there is a conflict now since another PR updating the lock-files was merged. I guess we can leave this open and the PR will be updated next Monday.

[lesteve]

Hmmm it looks like a thing in pytest 9.0 with raise unittest.case.SkipTest pytest-dev/pytest#13895.

[betatim]

Looks like pytest-dev/pytest#13912 will restore this functionality. This would be nice for us. Maybe we should look into moving to using pytest.skip() everywhere to allow pytest to remove nose related stuff?

[lesteve]

Given the number of projects that were affected, I guess it makes sense if pytest end up reverting the change. I guess we'll see what their plan is afterwards ...

Note that some of our non-test code should not depend on pytest so we could need to do something like the following in our non-test code (also in sklearn/utils/tests/test_estimator_checks.py which should run without pytest):

def skip_test(msg):
    pytest = sys.modules['pytest']
    if pytest is not None:
        pytest.skip(msg)
    else:
        raise SkipTest(msg)    

[betatim]

Good point about the "pytest isn't a requirement" angle.

[adrinjalali]

So are we waiting for another week for another round of the bot on this PR?

[lesteve]

So are we waiting for another week for another round of the bot on this PR?

I am reading disappointment in your comment @adrinjalali 😝. Pytest 9.0.1 has been released 2 hours ago which should fix it. I tried to re-trigger the update lock file workflow manually to see what this would do 🤞.

[lesteve]

So it updated all the other lock-file PR but not this one (i.e. the main CI one), apparently the latest pip and pip-tools version are not compatible 🙄 jazzband/pip-tools#2252. As many things, not hard to work-around but I'll stop here for today 😉.

Details

stderr:
Traceback (most recent call last):
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/bin/pip-compile", line 10, in <module>
    sys.exit(cli())
             ^^^^^
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/click/core.py", line 1462, in __call__
    return self.main(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/click/core.py", line 1383, in main
    rv = self.invoke(ctx)
         ^^^^^^^^^^^^^^^^
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/click/core.py", line 1246, in invoke
    return ctx.invoke(self.callback, **ctx.params)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/click/core.py", line 814, in invoke
    return callback(*args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/click/decorators.py", line 34, in new_func
    return f(get_current_context(), *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/piptools/scripts/compile.py", line 392, in cli
    constraints.extend(
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/piptools/_compat/pip_compat.py", line 115, in parse_requirements
    install_req = copy_install_requirement(install_req)
                  ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/usr/share/miniconda/envs/pip-tools-python3.12.5/lib/python3.12/site-packages/piptools/utils.py", line 503, in copy_install_requirement
    "use_pep517": template.use_pep517,
                  ^^^^^^^^^^^^^^^^^^^
AttributeError: 'InstallRequirement' object has no attribute 'use_pep517'

[webknjaz]

You can use v7.5.2 now.

[lesteve]

You can use v7.5.2 now.

Nice thanks for the heads-up 🙏!

For completeness, we will also need that pytest 9.0.1 is available in conda-forge. The automated PR conda-forge/pytest-feedstock#194 was opened a few hours ago.

[lesteve]

Just double-checked and pytest 9.0.1 is available in conda-forge now, so we will see on Monday what happens with the lock-file update 🤞

[betatim]

Looks like the robots are happy now with pytest 9.0.1