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Update fibertube_tracking.rst
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VincentBeaud authored Nov 6, 2024
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14 changes: 7 additions & 7 deletions docs/source/documentation/fibertube_tracking.rst
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Expand Up @@ -86,10 +86,10 @@ The first thing to do is resample ``centerlines.trk`` so that each
centerline is formed of segments no longer than 0.2 mm.

Note: This is because the next script will rely on a KDTree to find
all neighboring fibertube segments of any given point. Because the
search radius is set at the length of the longest fibertube segment,
the performance drops significantly if they are not shortened to
~0.2mm.
all neighboring fibertube segments of any given point. Because the
search radius is set at the length of the longest fibertube segment,
the performance drops significantly if they are not shortened to
~0.2mm.

To resample a tractogram, we can use this script from scilpy:

Expand Down Expand Up @@ -171,8 +171,8 @@ saved in ``metrics.txt``. (Values expressed in mm):
:alt: max_voxel_rotated visualized in 3D

Note: This information can be useful for analyzing the
reconstruction obtained through tracking, as well as for performing
track density imaging.
reconstruction obtained through tracking, as well as for performing
track density imaging.

Performing fibertube tracking
-----------------------------
Expand Down Expand Up @@ -222,7 +222,7 @@ waiting a little bit, feel free to play with the parameters and explore
the resulting tractogram.

Note: Given the time required for each streamline, the
``--processes`` parameter will be very useful.
``--processes`` parameter will be very useful.

Reconstruction analysis
~~~~~~~~~~~~~~~~~~~~~~~
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