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Merge pull request #17 from selfdecode/fix/fga-source-str
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fix: fga source string
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adrianodemarino authored Sep 5, 2023
2 parents ca85644 + 8666ade commit d312ad6
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion src/snps/io/reader.py
Original file line number Diff line number Diff line change
Expand Up @@ -1473,7 +1473,7 @@ def parse(sep):
df["chrom"] = df["chrom"].map(CHROMOSOME_FGA)
return (df,)

return self.read_helper("generic", parser)
return self.read_helper("fga", parser)

def read_vcf(self, file, compression, provider, rsids=()):
"""Read and parse VCF file.
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