Welcome to my GitHub portfolio! This repository showcases a variety of approaches to sequencing technology, focusing on the data processing and analysis of different samples. The purpose here is to display the range of techniques and coding strategies I have employed in my research.
I am a biologist with a Ph.D. in molecular biology, leveraging computational tools to explore complex biological problems. My work spans across genomic/transcriptomic data analysis, molecular biology, and epigenetics.
- 🏠 Website: Github Blog, GitHub, Lab_Hompage
- 📧 Email:
jchoi@inha.ac.kr
- Description: Explored the effects of oxidative stress in human keratinocyte cell lines, identifying crucial changes in gene expression and chromatin dynamics.
- Techniques Used: RNA-seq, ChIP-seq
- Publication: Choi J & Lee H. Free Radic. Biol. Med. 217 (2024): 48-59. Pubmed
- Dataset: GEO SuperSeries GSE250128
- Description: Examined gene expression and chromatin alterations in mesenchymal stem cells under differentiation stimuli.
- Techniques Used: RNA-seq, ChIP-seq
- Publications:
- Datasets: GEO SuperSeries GSE227538, GSE131369
- Description: Compared brain transcriptomes from young and middle-aged zebrafish to identify aging-related gene expression changes.
- Techniques Used: RNA-seq
- Status: Findings are being prepared for submission. Dataset to be released upon publication.
- Description: Studied gene expression and histone acetylation in plants under short-day treatment to reveal epigenetic mechanisms triggering flowering.
- Techniques Used: RNA-seq, ChIP-seq
- Status: Findings are being prepared for submission. Dataset to be released upon publication.
Feel free to reach out via email.
Thanks for visiting my portfolio!