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PyPI update
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Alexis Morrissey committed Sep 6, 2023
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2 changes: 1 addition & 1 deletion Allo/__init__.py
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from . import predictPeak
from . import allocation

__version__ = '1.0.3'
__version__ = '1.0.4'
2 changes: 1 addition & 1 deletion Allo/allo
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#!/bin/bash python
#!/usr/bin/env python
#Lexi Morrissey, Mahony Lab @ Pennsylvania State University
#Last updated 03.06.2023
#Main method for Allo. Splits the sam files up and sends them to allocation procedure via multiprocessing package.
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2 changes: 1 addition & 1 deletion Allo/allocation.py
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#!/bin/bash python
#!/usr/bin/env python
#Lexi Morrissey, Mahony Lab @ Pennsylvania State University
#Last updated 03.01.2023
#Contains methods for read allocation procedure of Allo.
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2 changes: 1 addition & 1 deletion Allo/predictPeak.py
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#!/bin/bash python
#!/usr/bin/env python
#Lexi Morrissey, Mahony Lab @ Pennsylvania State University
#Last updated 03.01.2023
#Contains method for predicting whether area should receive multimapped reads via pre-trained CNN in Allo.
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4 changes: 2 additions & 2 deletions setup.py
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setup(
name='bio-allo',
version='1.0.3',
version='1.0.4',
author='Alexis Morrissey',
author_email='anm5579@psu.edu',
packages=['Allo'],
python_requires='>=3.10, <3.11',
scripts=['Allo/allo'],
url='https://github.com/seqcode/allo/archive/refs/tags/v1.0.3.tar.gz',
url='https://github.com/seqcode/allo/archive/refs/tags/v1.0.4.tar.gz',
license='LICENSE.txt',
description='A multi-mapped read rescue strategy for ChIP-seq data',
include_package_data = True,
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