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Update README.md
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Adding version 0.5
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shaunmahony authored Jul 9, 2020
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Expand Up @@ -17,6 +17,7 @@ N Yamada, PK Kuntala, BF Pugh, S Mahony. "ChExMix: a method for identifying and

Downloading Executables
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* ChExMix version 0.5 (2020-07-09): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.5.jar)
* ChExMix version 0.45 (2019-12-11): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.45.jar)
* ChExMix version 0.4 (2019-04-25): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.4.jar)
* ChExMix version 0.3 (2019-01-15): [JAR](http://lugh.bmb.psu.edu/software/chexmix/chexmix_v0.3.jar)
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Major History:
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Version 0.5 (2020-07-09): Fixing mishandling of multimapped reads in BWA output BAM files. Option --nonunique now works as expected.

Version 0.45 (2019-12-11): Comment out unused code fragments to reduce memory requirements. Print out ChExMix parameters in HTML outputs. Several updates on command line options to modify parameters. Bug fixes.

Version 0.4 (2019-04-25): Updates on HTML output, heatmap, and sequence plots. Create extra outputs in event file. Updates on replicate handling options. Bug fixes.
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