Platform tutorial: nf-core/rnaseq full #131
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adamrtalbot
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Oct 2, 2024
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In general I like the flow but it starts to drift into a descriptive document. This means it becomes quite verbose and isn't obvious what steps to do next.
I would tighten up the second half to be more focused. You could probably achieve this by hacking bits out without adding too much so I don't think it's a huge job.
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Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
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christopher-hakkaart
requested changes
Oct 10, 2024
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Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
Co-authored-by: Christopher Hakkaart <chris.hakkaart@seqera.io> Signed-off-by: Llewellyn vd Berg <113503285+llewellyn-sl@users.noreply.github.com>
…into rnaseq-full-guide
…into rnaseq-full-guide
christopher-hakkaart
approved these changes
Oct 10, 2024
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Adds an nf-core/rnaseq 1-page tutorial, including compute environment recommendation and config, importing via Seqera Pipelines, adding data via DE and datasets, pipeline launch and monitoring, results analysis with Data Studios, pipeline optimization, and pipeline requirements based on input dataset size and benchmarking.