Create devcontainer.json #30
Workflow file for this run
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name: test | |
on: | |
push: | |
branches: [main] | |
paths-ignore: | |
- "!**/*.md" | |
pull_request: | |
branches: [main] | |
paths-ignore: | |
- "!**/*.md" | |
merge_group: | |
types: [checks_requested] | |
branches: [main] | |
# Cancel if a newer run is started | |
concurrency: | |
group: ${{ github.workflow }}-${{ github.ref }} | |
cancel-in-progress: true | |
jobs: | |
prettier: | |
runs-on: ubuntu-latest | |
steps: | |
- name: Check out repository | |
uses: actions/checkout@v3 | |
- name: Install NodeJS | |
uses: actions/setup-node@v3 | |
- name: Install Prettier | |
run: npm install -g prettier | |
- name: Run Prettier --check | |
run: prettier --check . | |
nf-test: | |
runs-on: ubuntu-20.04 | |
env: | |
NXF_ANSI_LOG: false | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: actions/cache@v3 | |
with: | |
path: /usr/local/bin/nextflow | |
key: ${{ runner.os }} | |
restore-keys: | | |
${{ runner.os }}-nextflow- | |
- name: Install Nextflow | |
env: | |
CAPSULE_LOG: none | |
run: | | |
wget -qO- get.nextflow.io | bash | |
sudo mv nextflow /usr/local/bin/ | |
- name: Cache nf-test installation | |
id: cache-software | |
uses: actions/cache@v3 | |
with: | |
path: | | |
/usr/local/bin/nf-test | |
/home/runner/.nf-test/nf-test.jar | |
key: ${{ runner.os }}-nftest | |
- name: Install nf-test | |
if: steps.cache-software.outputs.cache-hit != 'true' | |
run: | | |
wget -qO- https://code.askimed.com/install/nf-test | bash | |
sudo mv nf-test /usr/local/bin/ | |
# Test the module | |
- name: Run nf-test | |
run: | | |
nf-test test \ | |
--tap=test.tap | |
- uses: pcolby/tap-summary@v1 | |
with: | |
path: >- | |
test.tap |