Add automated linting fixer workflow #4
Workflow file for this run
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| name: test | ||
| on: | ||
| push: | ||
| branches: [main] | ||
| paths-ignore: | ||
| - "!**/*.md" | ||
| pull_request: | ||
| branches: [main] | ||
| paths-ignore: | ||
| - "!**/*.md" | ||
| merge_group: | ||
| types: [checks_requested] | ||
| branches: [main] | ||
| # Cancel if a newer run is started | ||
| concurrency: | ||
| group: ${{ github.workflow }}-${{ github.ref }} | ||
| cancel-in-progress: true | ||
| jobs: | ||
| prettier: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Check out repository | ||
| uses: actions/checkout@v3 | ||
| - name: Install NodeJS | ||
| uses: actions/setup-node@v3 | ||
| - name: Install Prettier | ||
| run: npm install -g prettier | ||
| - name: Prettier Action | ||
| uses: creyD/prettier_action@v4.3 | ||
| prettier_options: | ||
| - "--write" | ||
| - "'*'" | ||
| - name: Run Prettier --check | ||
| run: prettier --check . | ||
| nf-test: | ||
| runs-on: ubuntu-20.04 | ||
| needs: prettier | ||
| env: | ||
| NXF_ANSI_LOG: false | ||
| steps: | ||
| - uses: actions/checkout@v3 | ||
| - uses: actions/cache@v3 | ||
| with: | ||
| path: /usr/local/bin/nextflow | ||
| key: ${{ runner.os }} | ||
| restore-keys: | | ||
| ${{ runner.os }}-nextflow- | ||
| - name: Install Nextflow | ||
| env: | ||
| CAPSULE_LOG: none | ||
| run: | | ||
| wget -qO- get.nextflow.io | bash | ||
| sudo mv nextflow /usr/local/bin/ | ||
| - name: Cache nf-test installation | ||
| id: cache-software | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: | | ||
| /usr/local/bin/nf-test | ||
| /home/runner/.nf-test/nf-test.jar | ||
| key: ${{ runner.os }}-nftest | ||
| - name: Install nf-test | ||
| if: steps.cache-software.outputs.cache-hit != 'true' | ||
| run: | | ||
| wget -qO- https://code.askimed.com/install/nf-test | bash | ||
| sudo mv nf-test /usr/local/bin/ | ||
| # Test the module | ||
| - name: Run nf-test | ||
| run: | | ||
| nf-test test \ | ||
| --tap=test.tap | ||
| - uses: pcolby/tap-summary@v1 | ||
| with: | ||
| path: >- | ||
| test.tap | ||
