This is an automatically generated1 list of open source software from the world's 2023 top 50 pharmaceutical companies2 that are present on GitHub. It will be periodically refreshed from these GitHub accounts repositories.
You can also access what they have updated lately and which topics are covered by these software.
Note
stars - number of people who especially appreciated the repository
forks - number of people who have cloned the repository in order to modify it
watchers - number of people who are monitoring changes in the repository
main programming language
license
last update date & time
| Rank | Software |
|---|---|
| 94 | Bayer-Group/mwundo GeoJSON object, spray-json formats, and basic Geo/Geometry 17 8 Scala Other 2020-09-17 03:45:35 |
| 94 | Bayer-Group/docker-min-jessie Minimally sized Debian Jessie build 17 7 BSD 3-Clause "New" or "Revised" License 2015-09-30 13:59:00 |
| 95 | Novartis/RBesT Tool-set to support Bayesian evidence synthesis in R bayesian, clinical, historical-data, meta-analysis 16 2 R GNU General Public License v3.0 2024-01-08 17:02:56 |
| 95 | rdkit/mongo-rdkit GSoC 2020 project to integrate the RDKit and MongoDb 16 7 Python BSD 2-Clause "Simplified" License 2024-04-08 15:45:22 |
| 95 | insightsengineering/coverage-action Github Action that generates a coverage summary using a Cobertura XML report coverage, github-actions 16 5 MIT License 2024-05-14 15:23:20 |
| 95 | genentech/psborrow2 psborrow2: Bayesian Dynamic Borrowing Simulation Study and Analysis bayesian-dynamic-borrowing, psborrow2, r, simulation-study 16 2 R Other 2024-04-30 22:03:25 |
| 95 | bioinform/ecTMBcancer-genomics, tmb 16 10 R Other 2021-08-22 03:14:46 |
| 95 | AstraZeneca/peptide-tools Programs to calculate phys-chem properties of synthetic peptides and proteins: isoelectric point and extinction coefficients. 16 4 Python Apache License 2.0 2024-05-29 15:52:06 |
| 95 | AstraZeneca/data-science-python-course 16 15 Jupyter Notebook Apache License 2.0 2023-09-26 12:36:33 |
| 95 | biosustain/ancestry AngularJS module with interactive lineage chart components based on D3.js angularjs, biojs, biology, d3js, nodejs, visualization 16 4 JavaScript 2018-01-03 14:56:12 |
| 95 | Boehringer-Ingelheim/stain-transfer Comparative evaluation of image-to-image translation methods for stain transfer in histopathology 16 3 Python BSD 2-Clause "Simplified" License 2024-02-14 14:14:28 |
| 96 | pfizer-opensource/transform-molecules 15 2 Python Apache License 2.0 2023-02-13 20:13:02 |
| 96 | Novartis/MoaBox A repository of compound-target annotations in support of Systematic Chemogenetic Library Assembly 15 2 2020-06-03 14:13:30 |
| 96 | rdkit/UGM_2019 15 12 HTML 2019-10-28 16:34:27 |
| 96 | Merck/gsDesign2 Group Sequential Design Under Non-Proportional Hazards 15 6 R GNU General Public License v3.0 2024-06-07 23:23:06 |
| 96 | Merck/simtrial Clinical trial simulation for time-to-event endpoints 15 8 R GNU General Public License v3.0 2024-06-03 17:42:13 |
| 96 | Merck/BioPhi-2021-publication This repository contains scripts, data and jupyter notebooks used to produce the evaluation results in the BioPhi 2021 publication 15 2 Jupyter Notebook MIT License 2023-01-02 11:02:30 |
| 96 | insightsengineering/formatters A framework for creating listings of raw data that include specialized formatting, headers, footers, referential footnotes, and pagination. format, matrix, r, table 15 5 R Other 2024-06-04 13:24:58 |
| 96 | genentech/Absolve Absolve antibody variable domain sequence analysis 15 8 C++ MIT License 2018-09-13 22:39:17 |
| 96 | AstraZeneca/napari-wsi A plugin to read whole slide images within napari. 15 1 Python Apache License 2.0 2023-10-11 12:20:54 |
| 96 | MolecularAI/Lib-INVENT-dataset 15 11 Python Apache License 2.0 2023-03-11 11:41:02 |
| 96 | biosustain/pyOpenMS_UmetaFlow Untargeted metabolomics workflow for data processing and analysis written in Jupyter notebooks (Python) 15 8 Jupyter Notebook Apache License 2.0 2024-02-19 08:25:48 |
| 96 | biosustain/venom A transport-agnostic RPC framework for Python microservices, python-3, rpc 15 2 Python MIT License 2018-01-30 10:34:52 |
| 96 | Bayer-Group/COLID-Setup The setup repository is part of the Corporate Linked Data Catalog - short: COLID - application. It helps setting up a local environment based on Docker Compose. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 15 6 Shell BSD 3-Clause "New" or "Revised" License 2024-04-04 09:45:12 |
| 97 | Novartis/bamdd Applied modelling in drug development: flexible Bayesian regression modelling in Stan via brms bayesian, brms, clinical, stan 14 2 TeX GNU General Public License v2.0 2024-06-05 16:45:28 |
| 97 | Novartis/railroadtracks Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq. 14 3 Python Apache License 2.0 2015-06-22 14:24:11 |
| 97 | Novartis/gridvar GridVar is a jQuery plugin that visualizes multi-dimensional datasets as layers organized in a row-column format. 14 8 JavaScript Other 2014-02-21 18:09:14 |
| 97 | rdkit/UGM_2018 2018 RDKit UGM 14 9 Jupyter Notebook 2018-09-28 08:35:04 |
| 97 | Merck/metalite.ae An R package for standard adverse events analysis cdisc, clinical-trials, metadata, r-package 14 3 R GNU General Public License v3.0 2024-05-24 01:49:26 |
| 97 | Merck/metalite An R package to create metadata structure for ADaM data analysis and reporting cdisc, clinical-trials, metadata, r-package 14 5 R GNU General Public License v3.0 2024-03-22 17:49:27 |
| 97 | bedapub/splicekit splicekit: an integrative toolkit for splicing analysis from short-read RNA-seq 14 3 Python 2024-06-07 07:30:05 |
| 97 | AstraZeneca/biomedical-kg-topological-imbalance Code to accompany the "Implications of Topological Imbalance for Representation Learning on Biomedical Knowledge Graphs" (Briefings in Bioinformatics, 2022) drug-discovery, drug-discovery-knowledge-graph, knowledge-graph, knowledge-graph-completion, target-prediction 14 Jupyter Notebook Apache License 2.0 2024-06-07 07:59:07 |
| 97 | Sanofi-Public/emrflow EMRFlow is designed to simplify the process of running PySpark jobs on Amazon EMR (Elastic Map Reduce). 14 Python Apache License 2.0 2024-04-25 20:02:00 |
| 97 | biosustain/goodbye-genbank A Python package for Biopython that gives feature annotations from GenBank records a new and better life biopython, genbank, genomics, gff3, sequence-ontology 14 3 Python Other 2016-04-27 16:01:19 |
| 97 | bayer-science-for-a-better-life/contrastive-reconstruction Tensorflow-keras implementation for Contrastive Reconstruction (ConRec) : a self-supervised learning algorithm that obtains image representations by jointly optimizing a contrastive and a self-reconstruction loss. attention-pooling, conrec, finegrained, keras, represenation-learning, self-supervised-learning, simclr, tensorflow2, toy-dataset 14 3 Python GNU General Public License v3.0 2022-02-22 20:12:18 |
| 97 | regeneron-mpds/TCRAI 14 3 Jupyter Notebook Other 2021-06-24 19:16:22 |
| 98 | johnsonandjohnson/nlprov A simple Python library developed by Johnson & Johnson's Advanced Analytics team that combines existing libraries for common Natural Language Processing tasks. 13 4 Python Other 2023-01-26 18:37:59 |
| 98 | Novartis/xgxr R package for supporting exploratory graphics at http://opensource.nibr.com/xgx 13 7 R Other 2023-10-13 19:27:57 |
| 98 | Merck/boxly Interactive box plot for clinical trial analysis 13 1 R GNU General Public License v3.0 2024-05-17 04:18:15 |
| 98 | insightsengineering/rbmi Reference based multiple imputation R package 13 4 R Other 2024-06-05 12:08:47 |
| 98 | insightsengineering/sasr sasr r, r-package, rstats, statistical-engineering 13 2 R 2024-04-29 15:28:06 |
| 98 | genentech/GraphGUIDE 13 2 Jupyter Notebook Other 2023-02-09 20:26:34 |
| 98 | Roche/neuro-green This project contains the code for a deep learning architecture to analyze EEG data. 13 Python Apache License 2.0 2024-05-15 08:18:23 |
| 98 | AstraZeneca/ibd-interpret We trained high performing open source models on image scans of tissue biopsies to predict endoscopic categories in inflammatory bowel disease. These predictive models can help us better understand the disease pathology and represent a step towards automated clinical recruitment strategies. 13 2 Python 2023-03-03 12:11:08 |
| 98 | astrazeneca-cgr-publications/DrugnomeAI-release 13 5 Jupyter Notebook Mozilla Public License 2.0 2022-11-03 17:19:13 |
| 98 | Sanofi-Public/LMR-SurfaceID Repo contains source code of the SurfaceID paper apm-0074337, cc-6cl900 13 4 Python Other 2024-03-13 16:06:41 |
| 98 | Boehringer-Ingelheim/prettier-config This is the shared prettier configuration used at Boehringer Ingelheim for code formatting. prettier, prettier-config, prettierrc 13 JavaScript MIT License 2024-05-13 12:09:08 |
| 99 | Novartis/Jenkins-LSCI Jenkins for Life Science Continuous Integration 12 4 Groovy Other 2017-04-28 13:55:20 |
| 99 | rdkit/org.rdkit.lucene Lucene Chemical Index based on RDKit functionality. 12 4 Java 2016-08-26 15:12:39 |
| 99 | Merck/pmpo Probabilistic Multi-Parameter Optimization (pMPO) 12 5 Python Other 2017-04-07 19:09:34 |
| 99 | insightsengineering/scda Access Synthetic CDISC Data from Archive Packages cdisc, nest, r, synthetic-data 12 4 R Other 2024-04-29 14:30:55 |
| 99 | insightsengineering/JointSurvivalModels.jl Julia implementation of joint models combining longitudinal and survival endpoints joint-models, julia 12 Julia MIT License 2024-03-15 16:25:57 |
| 99 | MolecularAI/SMILES-RL 12 4 Python Apache License 2.0 2024-04-24 12:11:42 |
| 99 | GSK-Biostatistics/slushy 12 1 R Apache License 2.0 2024-06-07 20:20:21 |
| 99 | Gilead-BioStats/graphicalMCP Graphical Multiple Comparison Procedures 12 R Apache License 2.0 2024-06-07 18:43:27 |
| 99 | biosustain/pyrcos Python wrapper for Circos circos, circos-graphs, genome, python-wrapper, visualization 12 1 Python GNU General Public License v3.0 2018-01-08 07:43:57 |
| 99 | Boehringer-Ingelheim/FutureManager A R/shiny extension for forking expensive calculations 12 3 R MIT License 2021-06-11 12:41:11 |
| 100 | johnsonandjohnson/Guppy-Android Android Module about a curious fish named Guppy 11 1 Kotlin Other 2022-03-17 21:22:03 |
| 100 | rdkit/lmnb LaplacianNB is a Python module developed at Novartis AG for Naive Bayes classifier for laplacian modified models based on scikit-learn Naive Bayes implementation. 11 1 Python BSD 3-Clause "New" or "Revised" License 2023-07-03 14:12:56 |
| 100 | rdkit/OCEAN OCEAN - Optimized Cross rEActivity estimatioN 11 6 JavaScript 2020-04-29 10:14:49 |
| 100 | Merck/mRNAid 11 12 Jupyter Notebook Other 2024-05-06 05:07:01 |
| 100 | insightsengineering/teal.slice Reproducible slice module for teal applications modules, nest, r, slice 11 5 R Other 2024-06-07 12:56:35 |
| 100 | genentech/beignet A standard library for biological research. 11 4 Python MIT License 2024-06-06 18:16:34 |
| 100 | genentech/ringer RINGER: Rapid Conformer Generation for Macrocycles with Sequence-Conditioned Internal Coordinate Diffusion 11 Python MIT License 2024-03-18 21:49:49 |
| 100 | AstraZeneca/roo A package and environment manager for R 11 1 Python Apache License 2.0 2024-03-08 11:31:20 |
| 100 | Sanofi-Public/IDD-papers-generative-applicability-domains Repository for the code associated with the paper Impact of applicability domains by Maxime Langevin et al. cc-f40ccl2041 11 4 Jupyter Notebook 2023-07-11 10:29:55 |
| 100 | GSK-AI/afterglow A package for uncertainty estimation with PyTorch 11 Python Apache License 2.0 2021-08-26 18:38:20 |
| 100 | biosustain/potion-client A Python client for APIs written in Flask-Potion 11 12 Python MIT License 2022-11-21 08:33:02 |
| 100 | biosustain/cell-factory-design-course https://biosustain.github.io/cell-factory-design-course/ 11 7 Jupyter Notebook 2021-09-09 09:05:25 |
| 100 | Bayer-Group/xsmiles-jupyterlab A JupyterLab plugin implementing the XSMILES visualization 11 1 TypeScript BSD 3-Clause "New" or "Revised" License 2023-08-07 09:50:49 |
| 100 | modernatx/therapeutic_enzyme_engineering_with_generative_neural_networks 11 6 Jupyter Notebook Other 2023-02-17 09:46:14 |
| 100 | Biogen-Inc/IDEAFilter An R Shiny Filtering module. Demo the shiny module at: https://bit.ly/demo_IDEAFilter r, shiny 11 2 R Other 2024-04-19 15:08:34 |
| 101 | pfizer-opensource/pfabnet-viscosity 10 5 Jupyter Notebook Apache License 2.0 2023-01-09 16:36:53 |
| 101 | Novartis/mdx-utils 10 6 TypeScript 2023-01-06 06:47:17 |
| 101 | Novartis/div_rank This code allows is for diversity picking across multiple different, and potentially overlapping chemical compound classes, while at the same time optimizing a property score. This algorithm has been used in the re-design of the Novartis screening deck as described in https://dx.doi.org/10.1021/acs.jmedchem.0c01332 10 Python 2020-10-30 08:05:23 |
| 101 | Novartis/EQP-cluster Unix-based RNA-seq quantification pipeline 10 3 Java Apache License 2.0 2015-11-18 12:10:14 |
| 101 | Merck/forestly Interactive forest plot for adverse events analysis 10 3 R GNU General Public License v3.0 2024-06-05 03:40:44 |
| 101 | insightsengineering/ci-images Insights Engineering Container Images docker, images, r, reproducibility, rocker 10 2 R 2024-06-05 19:44:30 |
| 101 | insightsengineering/hermes Preprocessing, analyzing, and reporting of RNA-seq data r, r-package, rna-seq, rstats, statistical-engineering 10 2 R 2024-04-29 16:20:43 |
| 101 | insightsengineering/simIDM Simulation Engine for Multistate Models multistate-models, r, simulation-engine 10 R 2024-04-29 15:34:25 |
| 101 | genentech/GameRank 10 1 R 2024-04-04 07:12:37 |
| 101 | genentech/midasHLA R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping, analysis of HLA evolutionary divergence as well as HLA-KIR interactions. hla, immunogenetic, kir, r 10 6 R MIT License 2024-01-31 19:02:42 |
| 101 | BMS-CPP/PMWebSpec 10 3 PHP Other 2024-04-08 10:11:59 |
| 101 | AstraZeneca/NESS Official implementation of "NESS: Node Embeddings from Static Subgraphs" contrastive-learning, graph, graph-auto-encoder, link-prediction, node-embedding, self-supervised-learning, subgraph 10 Python Apache License 2.0 2023-05-30 09:08:44 |
| 101 | MolecularAI/reinvent-scoring 10 14 Python Apache License 2.0 2023-06-13 14:33:11 |
| 101 | GSK-AI/mocop Code and models for Molecule-Morphology Contrastive Pretraining (MoCoP) 10 1 Python Other 2024-04-12 18:22:29 |
| 101 | biosustain/flask-graphql-rest Flask extension to expose a GraphQL API as REST API 10 2 Python MIT License 2017-10-19 07:40:15 |
| 101 | AC-BO-Hackathon/ac-bo-hackathon.github.io (forked from: materials-data-facility/llm-hackathon) 10 67 1 HTML MIT license 2024-05-14 15:01:42 |
| 101 | regeneron-mpds/ICON 10 2 R Other 2021-01-24 15:43:13 |
| 102 | johnsonandjohnson/njmm New Jersey Maternal Mortality (NJMM) is an interactive web application that visualizes maternal mortality in the state of New Jersey in order to raise awareness of maternal mortality and make it easier to see how it relates to other potential factors (e.g. access to healthcare). maternal-health, maternal-mortality, new-jersey, r-programming, shiny 9 2 R MIT License 2023-04-04 14:25:20 |
| 102 | Novartis/AEGIS MHC-II presentation predictor 9 3 Python BSD 3-Clause "New" or "Revised" License 2023-08-11 12:35:34 |
| 102 | Novartis/UMM-Discovery UMM-Discovery is a fully unsupervised deep learning method to cluster cellular images with similar phenotypes together, solely based on the intensity values. deep-learning, moa, unsupervised 9 4 Apache License 2.0 2020-11-04 11:57:39 |
| 102 | Novartis/scRNAseq_workflow_benchmark Workflow for the analysis fo single-cell RNASeq data using R/bioconductor 9 3 R Apache License 2.0 2019-06-03 15:14:49 |
| 102 | Novartis/hpath An ontology of histopathological morphologies 9 3 Apache License 2.0 2018-04-24 02:56:16 |
| 102 | Novartis/habitat "Where files live" - Simple object management system using AWS S3 and Elasticsearch Service to manage objects and their metadata 9 6 Python Apache License 2.0 2016-05-03 21:29:16 |
| 102 | rdkit/UGM_2024 13th RDKit UGM. 11-13 September in Zurich, Switzerland 9 2024-03-11 07:52:32 |
| 102 | rdkit/UGM_2014 Materials from the 2014 RDKit UGM 9 11 JavaScript 2015-04-14 14:35:44 |
| 102 | rdkit/UGM_2013 9 7 2013-10-24 07:22:19 |
| 102 | Merck/GeneratedExpressions.jl A Julia package that implements a metalanguage to support expression comprehensions. julia-language, metaprogramming 9 1 Julia Other 2024-01-17 01:19:38 |
| 102 | Merck/bgc-pipeline 9 2 Jupyter Notebook MIT License 2021-07-12 07:26:30 |
| 102 | insightsengineering/teal.modules.general General Purpose Teal Modules general-purpose, modules, nest, r, shiny 9 6 R Other 2024-06-06 12:24:10 |
| 102 | insightsengineering/teal.code Code storage and execution class for teal applications nest, r, shiny 9 7 R Other 2024-05-23 14:33:50 |
| 102 | insightsengineering/scda.2022 An archive of synthetic CDISC data for 2022 cdisc, nest, r, synthetic-data 9 3 R Other 2024-05-06 14:28:22 |
| 102 | genentech/gPKPDviz 9 2 R 2023-12-13 17:53:38 |
| 102 | genentech/nodags-flows 9 1 Jupyter Notebook Apache License 2.0 2023-09-08 00:10:19 |
| 102 | AstraZeneca/detectIS A pipeline to rapidly detect exogenous DNA integration sites using DNA or RNA paired-end sequencing data 9 6 Perl Apache License 2.0 2023-04-25 08:59:37 |
| 102 | MolecularAI/NonadditivityAnalysis Notebook for standardization of actvity data, nonadditivity analysis and its evaluation. 9 4 Jupyter Notebook Apache License 2.0 2023-03-16 07:07:53 |
| 102 | astrazeneca-cgr-publications/mantis-ml-release-2.0 Mantis-ML 2.0 9 1 Python Mozilla Public License 2.0 2024-05-08 20:30:46 |
| 102 | GSK-Biostatistics/neo4cdisc Utilities and examples of loading and handling CDISC metadata and dummy clinical data in Neo4j graph database 9 2 Python Apache License 2.0 2023-07-27 13:11:58 |
| 102 | Boehringer-Ingelheim/toscaci tosca command line tool and service that simplify tosca integration with Continuous Integration tools 9 7 C# Apache License 2.0 2022-12-08 12:30:13 |
| 102 | Boehringer-Ingelheim/deep-learning-based-quantification-of-NAFLD-NASH Automated liver NAFLD/NASH scoring computer-vision, convolutional-neural-networks, deep-learning, histology-images, pathology 9 5 Jupyter Notebook BSD 3-Clause "New" or "Revised" License 2022-11-18 16:59:02 |
| 102 | Bayer-Group/solvmatebeat-undefined 9 Python GNU General Public License v2.0 2024-05-05 06:02:17 |
| 102 | Bayer-Group/COLID-Data-Marketplace-Frontend The Data Marketplace frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. Users can search for registered resources in COLID. It provides a search bar, aggregation filters and search result displaying including term highlighting. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 9 4 TypeScript BSD 3-Clause "New" or "Revised" License 2024-01-29 09:04:51 |
| 102 | Bayer-Group/mocka Mocka is a mocking and stubbing package written for the Go programming language. golang, golang-package, mocking, stubbing, testing 9 Go Other 2022-05-03 14:41:17 |
| 102 | Bayer-Group/cf-users Application to manage users and privileges in Cloud Foundry. 9 12 CoffeeScript Other 2017-10-12 20:35:22 |
| 102 | molecularinformatics/roshambo 9 Jupyter Notebook GNU General Public License v3.0 2024-05-29 21:23:53 |
| 103 | openPfizer/covid19-immune-model QSP model of immune response to COVID19 8 5 MATLAB Apache License 2.0 2020-08-11 14:09:55 |
| 103 | Novartis/granulator 8 7 R GNU General Public License v3.0 2021-06-17 06:06:48 |
| 103 | Novartis/subpat {subpat} is a collection of modules to create subpopulations and subgroups from clinical trial data 8 R Other 2020-04-05 08:35:28 |
| 103 | rdkit/rdkit_containers Containers for building and working with the RDKit 8 4 Dockerfile Apache License 2.0 2021-07-15 11:42:09 |
| 103 | rdkit/UGM_2015 Materials from the 2015 RDKit UGM 8 9 HTML 2015-10-15 05:09:25 |
| 103 | Merck/psm3mkv psm3mkv: A package to evaluate the fit and efficiency of three state oncology cost-effectiveness model structures 8 2 R GNU General Public License v3.0 2024-06-08 00:39:26 |
| 103 | Merck/Data-Profiler 8 7 Java Apache License 2.0 2022-12-13 22:06:49 |
| 103 | insightsengineering/teal.reporter Create and preview reports with Shiny modules nest, r, reporting, shiny 8 8 R Other 2024-06-06 11:59:45 |
| 103 | insightsengineering/tern.gee Create TLGs using Generalized Estimating Equations (GEE) 8 2 R 2024-05-21 15:29:54 |
| 103 | insightsengineering/teal.data Data model for teal applications data-model, nest, r 8 7 R Other 2024-05-21 14:17:07 |
| 103 | insightsengineering/hex-stickers hex sticker archive hex-stickers, r 8 1 R 2024-03-15 14:18:35 |
| 103 | genentech/SASS 8 2 Python Other 2024-01-10 08:05:24 |
| 103 | genentech/branched-diffusion 8 3 Jupyter Notebook Other 2023-01-10 13:19:37 |
| 103 | AstraZeneca/skywalkR-graph-features Example notebooks that illustrate how to generate knowledge-based features. Features can be used in a variety of ML models, including recommender systems. knowledge-graph, recommender-system 8 5 Jupyter Notebook Apache License 2.0 2022-02-23 09:09:15 |
| 103 | MolecularAI/Levenshtein Levenshtein SMILES augmentation for reaction datasets 8 2 Python Apache License 2.0 2023-03-16 07:18:28 |
| 103 | MolecularAI/Siamese-RNN-Self-Attention Contains code for Siamese Recurrent Neural Network with Self-Attention for Bioactivity Prediction astrazeneca, cheminformatics, deep-neural-networks, recurrent-neural-networks, siamese-neural-network 8 4 Python Apache License 2.0 2023-03-16 07:08:32 |
| 103 | Sanofi-Public/Alien 8 2 Jupyter Notebook Other 2023-10-20 17:40:14 |
| 103 | Sanofi-Public/IDD-papers-fragrl Repo for fragrl code for publication 8 5 Python 2023-09-06 07:37:39 |
| 103 | Gilead-BioStats/clindata Synthetic Data for testing and development 8 R Apache License 2.0 2024-03-07 17:58:07 |
| 103 | biosustain/multitfa Multivariate thermodynamics-based metabolic flux analysis in Python. cobrapy, fba, metabolism, multitfa, multivariate, python3, tfa, thermodynamics, tmfa 8 2 Python Apache License 2.0 2023-12-19 01:52:08 |
| 103 | biosustain/fermentation-mpc Model predictive control (MPC) for fermentations 8 3 Jupyter Notebook 2019-02-28 10:12:56 |
| 103 | biosustain/potion-node TypeScript client for Flask-Potion 8 5 TypeScript MIT License 2018-07-05 08:13:56 |
| 103 | Boehringer-Ingelheim/oncomsm Bayesian multi-state models for the analysis of oncology trials 8 1 R Other 2023-09-29 14:27:29 |
| 103 | Bayer-Group/mlr-xai-selfiesbeat-undefined 8 Python MIT License 2023-12-12 17:33:51 |
| 103 | Bayer-Group/go-workshop Structured hands-on workshop for learning Go beat-not-applicable, go, golang, tutorial, workshop 8 2 Go BSD 3-Clause "New" or "Revised" License 2021-08-30 17:02:52 |
| 103 | bayer-science-for-a-better-life/abfe-benchmark 8 Jupyter Notebook MIT License 2022-11-03 09:24:06 |
| 103 | bayer-science-for-a-better-life/graph-attribution (forked from: google-research/graph-attribution) Codebase for Evaluating Attribution for Graph Neural Networks. 8 1 Jupyter Notebook Apache-2.0 license 2021-05-31 11:36:40 |
| 103 | rgcgithub/karyoscan Abnormal karyotype detection from whole-exome sequence data 8 1 R Other 2017-10-17 13:05:19 |
| 104 | pfizer-opensource/moa-profiler 7 2 Python Apache License 2.0 2023-07-28 14:23:40 |
| 104 | pfizer-opensource/sit2standpy Python based module framework for detecting sit-to-stand transitions 7 8 Python MIT License 2021-05-06 16:07:39 |
| 104 | AbbVie-ComputationalGenomics/SAIGEgds Scalable Implementation of generalized mixed models using GDS files in Phenome-Wide Association Studies gds, gwas, mixed-model, phewas 7 5 C++ 2023-03-30 23:13:52 |
| 104 | johnsonandjohnson/mettle-components Mettle components are a collection of custom elements based of the Web Components spec to be used in front-end JavaScript applications. components, custom-elements, frond-end, javascript, web, web-components 7 3 JavaScript Apache License 2.0 2023-08-16 13:54:24 |
| 104 | Novartis/MOBER Multi-omics batch effect remover method 7 2 Python MIT License 2023-01-31 23:29:03 |
| 104 | Novartis/Advanced-User-Interfaces-for-Shiny-Developers 7 Other 2020-06-19 20:33:05 |
| 104 | Novartis/toolscore Script and example data for "Evidence-Based and Quantitative Prioritization of Tool Compounds in Phenotypic Drug Discovery" 7 2 R Apache License 2.0 2016-04-29 18:46:07 |
| 104 | Merck/CEEDesigns.jl A decision-making framework for the cost-efficient design of experiments, balancing the value of acquired experimental evidence and incurred costs. decision-making, experimental-design, julia-language 7 1 Julia Other 2024-06-03 23:31:59 |
| 104 | Merck/gMCPShiny A Shiny app for graphical multiplicity control clinical-trial-design, graphical-approach, group-sequential-designs, multiple-testing, multiplicity, r-package, rshiny-application 7 1 R GNU General Public License v3.0 2023-12-18 03:05:45 |
| 104 | Merck/rtdpy Residence Time Distribution modeling in Python. process-development, python, residence-time-distribution 7 8 Python MIT License 2021-08-02 13:11:27 |
| 104 | Merck/NNGP Nearest Neighbor Gaussian Process 7 3 MIT License 2020-11-13 17:23:47 |
| 104 | insightsengineering/teal.modules.hermes RNA-seq analysis modules to add to a teal application modules, r, rna-seq-analysis, shiny 7 1 R Other 2024-06-06 13:16:21 |
| 104 | insightsengineering/chevron Standard TLGs For Clinical Trials Reporting clinical-trials, graphs, listings, nest, r, reporting, tables 7 R Other 2024-06-05 14:57:39 |
| 104 | genentech/voxmol 7 Python Apache License 2.0 2024-03-08 16:40:42 |
| 104 | genentech/rd2markdown 7 R Other 2023-12-11 18:01:13 |
| 104 | genentech/uniprot-mongodb 7 1 JavaScript Other 2015-06-01 12:27:07 |
| 104 | genentech/uniprot-js 7 2 JavaScript Other 2015-06-01 12:25:26 |
| 104 | bedapub/designit Blocking and randomization for experimental design design-of-experiments, randomization, rstats 7 1 HTML Other 2024-04-04 15:55:19 |
| 104 | Roche/neuro-meeglet-paper Code for spectral analysis of EEG using Morlet wavelets based on the frequency-based parametrization presented in [Bomatter et al 2023, bioRxiv](http://www.biorxiv.org/content/10.1101/2023.12.15.571864v5) 7 Python Apache License 2.0 2024-05-31 13:21:32 |
| 104 | bioinform/IDP IDP is a statistical isoform prediction method to construct possible isoform candidates from the union of long reads and short reads with spliced alignment 7 4 Python Other 2017-02-23 22:18:03 |
| 104 | NovoNordisk-OpenSource/decentralized-tech-radar Decentralized Tech Radar - ITU ISE 2024 Collaboration 7 3 JavaScript GNU Affero General Public License v3.0 2024-06-01 18:41:26 |
| 104 | Boehringer-Ingelheim/goat-health-app Take care of your goats in a healthy way goat, hacktoberfest, i18n, ionic, making-more-health, react, social-entrepreneurship, typescript, veterinary 7 2 TypeScript GNU General Public License v3.0 2023-09-28 09:48:50 |
| 104 | Bayer-Group/GeospatialSwift Geospatial swift framework for GeoJson with geohashing, calculations, and much more 7 2 Swift Other 2023-10-30 16:40:46 |
| 104 | Bayer-Group/giae Implementation of the Paper "Unsupervised Learning of Group Invariant and Equivariant Representations" presented at NeurIPS 2022. 7 2 Jupyter Notebook BSD 3-Clause "New" or "Revised" License 2023-01-10 16:41:20 |
| 104 | Bayer-Group/chinese-restaurant-process Highly optimized Scala implementation of Chinese Restaurant Process based non-parametric Bayesian clustering 7 4 Scala BSD 3-Clause "New" or "Revised" License 2015-12-02 15:47:59 |
| 104 | bayer-science-for-a-better-life/pege Protein Environment Graph Embeddings 7 1 Python 2022-11-29 14:56:36 |
| 105 | openPfizer/Liver-Model-Manuscript QSP model of liver lipid metabolism for 2022 publication. 6 2 Julia Apache License 2.0 2022-06-15 18:45:57 |
| 105 | AbbVie-ComputationalGenomics/POEMColoc POEMColoc R package for colocalization with imputed summary statistics 6 1 R Apache License 2.0 2020-05-19 20:23:56 |
| 105 | johnsonandjohnson/transformation_generator 6 Python Apache License 2.0 2023-03-15 18:29:38 |
| 105 | Novartis/SPD A novel preclinical secondary pharmacology resource illuminates target-adverse drug reaction associations of marketed drugs 6 1 Jupyter Notebook MIT License 2023-05-30 15:07:35 |
| 105 | Merck/AbLEF Antibody Langauge Ensemble Fusion - fuses antibody structural ensemble and language representation for property prediction 6 2 Python 2024-04-23 15:09:12 |
| 105 | Merck/gMCPLite Lightweight graph-based multiple comparison procedures 6 2 R GNU General Public License v3.0 2024-02-13 22:22:04 |
| 105 | Merck/matcher-mmpdb 6 2 Python MIT License 2023-07-11 13:40:06 |
| 105 | insightsengineering/tern.mmrm Create MMRM TLGs using lme4 and tern graphs, listings, r, statistical-engineering, tables 6 1 R 2024-06-06 11:43:17 |
| 105 | genentech/Perturb-OT Cross-modality matching and prediction with labeled Gromov-Wasserstein Optimal Transport. 6 Jupyter Notebook Other 2024-05-06 16:14:05 |
| 105 | genentech/Islander 6 Jupyter Notebook MIT License 2024-04-06 21:07:42 |
| 105 | Roche/respectables R package to specify relational specified data tables r 6 2 R 2021-10-25 09:51:41 |
| 105 | AstraZeneca/hsqc_structure_elucidation Implementation of the SGNN graph neural network for 1H and 13C NMR prediction and a tool for distinguishing different molecules based on HSQC simulations 6 Jupyter Notebook Apache License 2.0 2023-09-29 15:08:55 |
| 105 | AstraZeneca/Tendril This repository contains R package code for calculating tendril plots. 6 1 R GNU General Public License v2.0 2022-05-26 15:51:36 |
| 105 | AstraZeneca/CTELC-Patient-Attrition-Model Clinical Trial Enrollment Life Cycle (CTELC) modeling project aims to leverage "industry-wide" data to understand key drivers and build predictive models. Patient attrition, also referred to as dropout or patient withdrawal, occurs when patients enrolled in a clinical trial either withdraw or are lost to follow-up by the clinical site and trial … 6 R Apache License 2.0 2020-12-16 17:40:11 |
| 105 | MolecularAI/IcolosCommunity Repository contains jupyter notebooks illustrating the use of the Icolos workflow manager 6 5 Jupyter Notebook Apache License 2.0 2023-03-16 16:16:14 |
| 105 | AstraZeneca-Code-Club/practical-python (forked from: THargreaves/practical-python) Session material and solutions for the Practical Python course at AZ Macclesfield 6 2 3 Jupyter Notebook MIT license 2020-04-03 08:22:25 |
| 105 | Sanofi-Public/PMCB-ToBridge PMCB-SCB scRNA-seq pipeline 6 1 Python 2024-04-08 18:53:02 |
| 105 | Sanofi-IADC/glisten Feedback component plugin for whispr dashboard-component, feedbacks 6 5 Vue MIT License 2024-06-03 19:13:23 |
| 105 | GSK-AI/seq2cells 6 2 Python Apache License 2.0 2023-09-08 18:12:48 |
| 105 | EliLillyCo/github-actions-post-to-pr Github Actions Post to Pull Request with Previous Build Result Comparison actions, github, node 6 4 JavaScript MIT License 2024-02-01 13:16:46 |
| 105 | EliLillyCo/rfacts Call FACTS from R on Linux clinical-trials, facts, r, simulation 6 1 R Other 2022-08-19 13:02:00 |
| 105 | biosustain/data_club 6 2 HTML 2023-12-06 11:57:11 |
| 105 | biosustain/gnomic A grammar for describing microbial genotypes and phenotypes bioinformatics, biology, microbial-genomics, python 6 2 Python Other 2017-09-04 11:44:04 |
| 105 | Boehringer-Ingelheim/BayesianMCPMod 6 3 R Apache License 2.0 2024-06-07 12:20:06 |
| 105 | BICompChem/MSM_bind (forked from: linkerst/MSM_bind) 6 1 Jupyter Notebook GNU Lesser General Public License v3.0 2018-12-04 08:41:27 |
| 105 | Bayer-Group/BIC-BReasybayer-not-classified, bayer-reg-none, beat-not-applicable 6 3 R GNU General Public License v3.0 2024-05-31 10:12:27 |
| 105 | Bayer-Group/COLID-Editor-Frontend The editor frontend repository is part of the Corporate Linked Data Catalog - short: COLID - application. It offers user an metadata based user interface to register resources in COLID. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 6 1 TypeScript BSD 3-Clause "New" or "Revised" License 2024-01-08 15:27:59 |
| 105 | Bayer-Group/CPMolGANbayer-not-classified, bayer-reg-none, beat-not-applicable 6 2 HTML BSD 3-Clause "New" or "Revised" License 2022-12-07 14:47:51 |
| 105 | Bayer-Group/xtars-naacl2022 Zero/few-shot learning for classification with very large label sets and long-tailed distribution of labels in data points bayer-not-classified, bayer-reg-none, beat-not-applicable, few-shot-learning, large-scale-classification, natural-language-processing, text-classification, zero-shot-learning 6 Python MIT License 2022-11-29 13:47:05 |
| 105 | Bayer-Group/Parrot Parrot is a compile-time Mock Generator for Swift - written completely in Swift. It's geared towards use in Xcode and works for any kind of swift project (e.g. server side, iOS, or command line tools). The mock structure is modeled off of the sinon.js APIs 6 3 Swift Other 2019-08-09 17:50:51 |