This is an automatically generated1 list of open source software from the world's 2023 top 50 pharmaceutical companies2 that are present on GitHub. It will be periodically refreshed from these GitHub accounts repositories.
You can also access what they have updated lately and which topics are covered by these software.
Note
stars - number of people who especially appreciated the repository
forks - number of people who have cloned the repository in order to modify it
watchers - number of people who are monitoring changes in the repository
main programming language
license
last update date & time
| Rank | Software |
|---|---|
| 106 |
pfizer-opensource/CoSpred Mass Spectrometry Spectrum Prediction Workflow 5 Python Apache License 2.0 2024-04-19 03:45:44 |
| 106 |
Novartis/dms-pipeline Snakemake pipeline for quantification of deep mutational scanning (DMS) data from overlapping paired-end reads in fastq files from amplicon sequencing 5 Python MIT License 2023-12-15 16:14:21 |
| 106 |
Novartis/hdf5r 5 26 C Apache License 2.0 2021-08-16 18:45:09 |
| 106 |
Novartis/CellSIUS CellSIUS: Cell Subtype Identification from Upregulated gene Sets 5 2 R Apache License 2.0 2019-06-03 15:13:42 |
| 106 |
rdkit/UGM_2017 2017 RDKit UGM 5 19 Jupyter Notebook 2017-11-03 12:03:36 |
| 106 |
insightsengineering/teal.osprey Community efforts to collect teal modules for TLGs defined in the osprey package modules, nest, r 5 2 R Other 2024-06-06 11:17:18 |
| 106 |
insightsengineering/biomarker-catalog Biomarker Analysis Templates of Tables And Graphs 📊 5 SCSS 2024-06-05 17:34:30 |
| 106 |
insightsengineering/goshawk Functions that plot and summarize biomarkers/labs of interest plot, r, summarization 5 1 R Other 2024-06-03 08:15:22 |
| 106 |
insightsengineering/nestcolor Package managing visual conventions of NEST graphs 5 2 R Other 2024-04-29 14:27:47 |
| 106 |
insightsengineering/ggplot2.utils Utilities, in particular geoms and stats, for use with ggplot2 5 R 2024-04-29 14:27:37 |
| 106 |
insightsengineering/nest Website for the Nest project 🪺 clinical-trial-analysis, data-science, nest, r, shiny, website 5 3 JavaScript Apache License 2.0 2024-03-15 15:52:38 |
| 106 |
genentech/multiGroupVI 5 1 Jupyter Notebook Apache License 2.0 2022-11-27 22:29:44 |
| 106 |
genentech/fishtones-js 5 2 JavaScript Other 2015-04-08 12:25:55 |
| 106 |
Roche/gemtcPlus R package that provides models and functions to fit non-standard NMAs: piecewise exponential models and fractional polynomial models for grouped survival data (derived from digitized Kaplan-Meier curves). evidence-synthesis, health-economic-evaluation, health-economics, hta, r 5 3 R Apache License 2.0 2023-06-27 09:50:12 |
| 106 |
bioinform/LSC LSC is a long read error correction tool. It offers fast correction with high sensitivity and good accuracy. 5 1 Python Other 2014-12-10 21:36:08 |
| 106 |
AstraZeneca/multimodal-python-course The purpose of the code is to facilitate a comprehensive understanding of multimodal data science applications within medical domain. The code serves to support the delivery of a cutting-edge workshop designed to introduce researchers to the rapidly evolving field of multimodal data science 5 Jupyter Notebook Apache License 2.0 2024-05-19 14:34:31 |
| 106 |
AstraZeneca/UnlockingHeart This repository accompanies our paper Unlocking the Heart Using Adaptive Locked Agnostic Networks and enables replication of the key results. alan, echocardiography, segmentation, self-supervised-learning, visual-transformers 5 Python 2023-09-22 06:24:59 |
| 106 |
AstraZeneca/Siamese-Regression-Pairing Siamese Neural Networks for Regression: Similarity-Based Pairing and Uncertainty Quantification 5 2 Python Apache License 2.0 2023-07-06 20:42:47 |
| 106 |
MolecularAI/reaction-graph-link-prediction 5 Python Apache License 2.0 2024-05-18 10:29:16 |
| 106 |
MolecularAI/maize-contrib Contributed and additional nodes for maize 5 3 Python Apache License 2.0 2024-01-23 17:24:50 |
| 106 |
MolecularAI/MMP_project Code for paper drug-design, machine-learning, matched-molecular-pair, non-additive-effects, qsar, qsar-models 5 1 Jupyter Notebook Apache License 2.0 2023-03-17 15:29:53 |
| 106 |
MolecularAI/molwall MolWall: "Wall of molecules" interface to see and rate molecules 5 3 Python Apache License 2.0 2023-03-15 16:20:08 |
| 106 |
MolecularAI/reinvent-chemistry 5 7 Python Apache License 2.0 2023-03-11 11:45:31 |
| 106 |
AstraZeneca-Code-Club/intermediate_python (forked from: jharrymoore/intermediate_python) Collection of notebooks for intermediate python course 5 7 1 Jupyter Notebook 2021-08-19 13:08:51 |
| 106 |
GSK-Biostatistics/tfrmtbuilder 5 R Apache License 2.0 2024-05-13 16:26:14 |
| 106 |
biosustain/EcoliKineticBenchmark This repository contains code to replicate study-benchmark of published E. coli kinetic metabolic models 5 3 Jupyter Notebook 2020-10-18 13:20:32 |
| 106 |
biosustain/protov Bounds checking and other validation for Protocol Buffers in Python 5 1 Python MIT License 2016-08-29 14:37:48 |
| 106 |
Agile-Arch-Angels/decentralized-tech-radar_dev (forked from: NovoNordisk-OpenSource/decentralized-tech-radar) Decentralized Tech Radar - ITU ISE 2024 Collaboration - Development Fork 5 1 JavaScript AGPL-3.0 license 2024-06-01 18:41:24 |
| 106 |
Bayer-Group/react-color-a11y React higher-order component to automatically enforce color accessibility 5 1 TypeScript MIT License 2024-06-05 16:08:52 |
| 106 |
Bayer-Group/COLID-AppData-Service The appdata service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It maintains the user data and application settings. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 5 1 C# BSD 3-Clause "New" or "Revised" License 2024-01-29 09:07:07 |
| 106 |
Bayer-Group/COLID-Search-Service The search service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It makes the data findable and provides indexing and search functionalities based on Elasticsearch. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 5 1 C# BSD 3-Clause "New" or "Revised" License 2024-01-29 09:06:05 |
| 106 |
Bayer-Group/COLID-Reporting-Service The reporting service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It offers an API for statistics of registered resources. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 5 1 C# BSD 3-Clause "New" or "Revised" License 2024-01-08 15:33:40 |
| 106 |
Bayer-Group/COLID-Indexing-Crawler-Service The Indexing Crawler Service (ICS) repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is responsible to extract data from a RDF storage system, transform and enrich the data and finally to send it via a message queue to the DMP Webservice for indexing. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 5 C# BSD 3-Clause "New" or "Revised" License 2024-01-08 15:28:23 |
| 106 |
Bayer-Group/pavo PAthological Visualization Obsession - visualization playground for pado datasets digital-pathology, python, visualization 5 2 Python BSD 3-Clause "New" or "Revised" License 2023-07-19 20:33:11 |
| 106 |
Bayer-Group/passport-ping-oauth2 Ping OAuth 2.0 authentication strategy for Passport. 5 6 JavaScript MIT License 2023-05-12 09:20:14 |
| 106 |
Bayer-Group/xBCF Predicting BCF values with explanations bayer-not-classified, bayer-reg-none, bcf, beat-not-applicable, chemoinformatics, deep-learning, explainability, machine-learning 5 Python BSD 3-Clause "New" or "Revised" License 2023-02-13 08:41:36 |
| 106 |
Bayer-Group/geostyler-geoserver-sld-parser GeoStyler-Geoserver-Style-Parser implementation for SLD geoserver, geostyler, parser, sld, styles 5 3 TypeScript Other 2022-07-20 01:37:37 |
| 106 |
Bayer-Group/Github-Enterprise-Org-Explorer 5 4 CoffeeScript Other 2017-10-16 18:05:06 |
| 106 |
Bayer-Group/simple-spray Simple Spray Application Demo 5 7 Scala Other 2016-02-20 12:55:16 |
| 106 |
bayer-science-for-a-better-life/abbert-cerebras 5 Python 2023-02-16 16:22:52 |
| 106 |
bayer-science-for-a-better-life/molnet-geometric-lightning MoleculeNet Benchmarks in Pytorch Lightning with Torch Geometirc 5 1 Jupyter Notebook MIT License 2021-10-28 12:39:18 |
| 106 |
molecularinformatics/PretrainedAL-VS 5 Python MIT License 2024-03-07 06:04:23 |
| 107 |
pfizer-opensource/mouse-echo-neural-net 4 1 Python Apache License 2.0 2022-07-21 22:24:01 |
| 107 |
pfizer-opensource/pseudo 4 Python Apache License 2.0 2022-06-28 08:40:39 |
| 107 |
openPfizer/vpop-gen Virtual population generation, fitting, and benchmarking. acceptance-rejection, biological-modeling, genetic-algorithm, global-optimization, metropolis-hastings, monte-carlo-sampling, ode-model, qsp, quantitative-systems-pharmacology, virtual-population 4 MATLAB Apache License 2.0 2018-06-29 18:33:24 |
| 107 |
abbvie-external/Predictive-Interpretable-Neural-Network-for-Druggability-PINNED- 4 3 Jupyter Notebook 2023-04-03 14:17:55 |
| 107 |
Novartis/verifyr A package to hold R functions for comparing different version of clinical trial TLFs 4 5 Rich Text Format MIT License 2024-01-01 14:15:16 |
| 107 |
Novartis/NDSRIs_in_silico_tool N-nitrosamine Autonomous Carcinogenic Potency Categorization Approach Calculation Tool 4 1 Jupyter Notebook Apache License 2.0 2023-12-13 01:57:01 |
| 107 |
Novartis/Project-Mona-Lisa Project Mona Lisa (PML): Machine-learning Assisted Diagramming Platform 4 1 JavaScript Apache License 2.0 2022-11-21 22:04:00 |
| 107 |
Merck/MolPROP fuses molecular language and graph representation for property prediction 4 1 Python 2024-06-01 00:14:18 |
| 107 |
Merck/compoundcomplexity This is an implementation of Compound Complexity for use in the SMART-PMI as described by Sherer et al. It contains derived training data as required by the described Random Forest Model in order to replicate data presented in paper as well as applying to novel data. 4 3 Perl Other 2021-12-22 21:42:46 |
| 107 |
insightsengineering/osprey Community effort to collect TLG code and create a catalogue catalog, graphs, listings, nest, r, tables 4 1 R Other 2024-06-07 13:18:34 |
| 107 |
insightsengineering/teal.widgets shiny widgets for teal applications nest, r, shiny, widgets 4 4 R Other 2024-05-24 00:48:10 |
| 107 |
insightsengineering/teal.logger Logging setup for the teal family of packages logging, nest, r, utilities 4 2 R Other 2024-05-24 00:44:30 |
| 107 |
insightsengineering/presidio-cli CLI tool that analyze Text for PII Entities with Microsoft Presidio framework. pii, presidio, python 4 1 Python Other 2024-04-29 16:22:15 |
| 107 |
insightsengineering/r-spellcheck-action Github Action that performs a spell check on an R package github-actions, r, spellcheck 4 R Apache License 2.0 2024-03-15 16:01:29 |
| 107 |
insightsengineering/r-license-report Github Action to generate an R Package Dependencies' License Report github-actions, license-checking, r 4 2 R MIT License 2024-03-15 15:40:56 |
| 107 |
insightsengineering/uniCATE Univariate conditional average treatment effect estimation for predictive biomarker discovery biomarkers, clinical-trials, high-dimensional-data, nonparametrics, r, treatment-effects 4 1 R Other 2024-03-15 15:37:42 |
| 107 |
insightsengineering/scda.2021 An archive of synthetic CDISC data for 2021 cdisc, nest, r, synthetic-data 4 1 R Other 2022-12-11 17:11:41 |
| 107 |
genentech/data-detective 4 1 Python Other 2024-05-25 00:42:35 |
| 107 |
genentech/bandwidth-graph-generation 4 Python Other 2023-01-30 22:34:08 |
| 107 |
genentech/battery Architecture framework for Shiny Apps architecture, component-architecture, rstats, shiny, shiny-apps 4 1 R MIT License 2022-08-23 08:41:13 |
| 107 |
genentech/FacileDataSet A fluent API for accessing multi-assay high-throughput genomics data. 4 R MIT License 2018-12-06 23:21:20 |
| 107 |
bedapub/space-microbe 4 Python 2023-04-10 19:35:00 |
| 107 |
Roche/Global-HTA-Evidence-Open Collection of R Packages that support analysis for the purposes of Health Technology Assessment (HTA) cost-effectiveness, cost-effectiveness-analysis, health-economic-evaluation, health-economics, hta, open-source, r 4 3 R Apache License 2.0 2021-10-22 13:48:28 |
| 107 |
bioinform/longislnd LongISLND - Long In silico Sequencing of Lengthy and Noisy Datatypes 4 4 Java Other 2017-04-30 21:12:15 |
| 107 |
AstraZeneca/MVDA_exploration_tools Multivariate data analysis (MVDA) exploration tool is a Python library utilizing the scikit-learn library for partial least squares (PLS) and principal components analysis (PCA). 4 1 Jupyter Notebook Apache License 2.0 2024-06-05 13:09:10 |
| 107 |
AstraZeneca/SelfPAD The official implementation of "Improving Antibody Humanness Prediction using Patent Data". antibody, antibody-design, antibody-sequence, attention, contrastive-learning, humanness, immunogenicity-prediction, patent-data, transformer 4 1 Python Apache License 2.0 2024-02-14 22:02:22 |
| 107 |
AstraZeneca/ConvCaps-DR Tensorflow-Keras implementation of deep Convolutional Capsule Networks with Dynamic Routing algorithm 4 Python Apache License 2.0 2024-02-01 21:08:24 |
| 107 |
AstraZeneca/Multimodal_NSCLC multi-omics data integration helps improving patient survival prediction. We provide a pipeline allowing for early integration of multiple omics plus clinical modalities in order to predict patient survival for NSCLC. The pipeline utilizes autoencoders, and helps identify main driving factor in survival prediction 4 R Apache License 2.0 2023-01-05 11:23:06 |
| 107 |
MolecularAI/reinvent-models 4 9 Python Apache License 2.0 2023-03-11 11:44:24 |
| 107 |
AstraZeneca-NGS/Seq2C 4 5 Perl MIT License 2024-01-11 03:05:15 |
| 107 |
Sanofi-Public/IDD-Papers-AI4DR Repository for the code associated with the paper 'AI4DR: Development and Implementation of an Annotation System for High-Throughput Dose-Response Experiments' 4 Jupyter Notebook Other 2022-12-19 10:42:03 |
| 107 |
Sanofi-IADC/konflu-cli Martial Arts for Confluence automation command-line, confluence 4 1 TypeScript MIT License 2023-12-15 08:17:50 |
| 107 |
GSK-Biostatistics/tab2neo Utilities to load and process tabular data to Neo4j graph database 4 Python Apache License 2.0 2023-12-04 10:48:24 |
| 107 |
GSK-AI/rambla 4 1 Python Apache License 2.0 2024-03-08 17:35:45 |
| 107 |
EliLillyCo/ErlWoodKNIME This is the LRL_ErlWoodKNIME Repo lrl 4 5 Java GNU General Public License v3.0 2024-06-06 11:38:11 |
| 107 |
EliLillyCo/jenkinsdsl Eli Lilly Jenkins Domain Specific Language (DSL) 4 3 Groovy 2021-10-12 20:33:47 |
| 107 |
biosustain/pseudobatch The Pseudobatch transformation is a method to easy analysis of measurement from a fed-batch fermentation process. After transformation, the data can be analysed as if it was obtained from a batch fermentation process. The Pseudobatch transformation is especially useful for fed-batch processes where samples where drawn from the bioreactor. fed-batch, fermentation, fermentation-process, microbiology 4 Jupyter Notebook MIT License 2024-06-04 14:38:25 |
| 107 |
biosustain/THG A protocol for the automatic construction of high quality genome-scale models of human metabolism 4 Python Creative Commons Attribution 4.0 International 2023-04-25 08:09:32 |
| 107 |
biosustain/p-thermo Genome-scale metabolic model of P. thermoglucosidasius NCIMB 11955 4 HTML Apache License 2.0 2022-09-29 15:26:53 |
| 107 |
biosustain/trp-scores Code used for scoring genes as candidates for increased tryptophan production 4 2 MATLAB MIT License 2021-02-16 16:52:26 |
| 107 |
biosustain/iVnat Draft genome-scale metabolic model of Vibrio natriegens 4 1 Jupyter Notebook Creative Commons Attribution 4.0 International 2019-04-02 09:57:46 |
| 107 |
bi-compbio/diabetic_retinopathy_iowa Code for the analysis of RNA-Sequencing data from post-mortem human retina with varying stages of diabetic retinopathy (GSE160310). 4 1 R 2020-11-09 16:35:05 |
| 107 |
Bayer-Group/atomic-spinner Customizable React loading spinner that looks like an atom 4 1 TypeScript MIT License 2024-04-20 02:47:38 |
| 107 |
Bayer-Group/COLID-Registration-Service The registration service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It is the central microservice to register resources in the triplestore. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 4 1 C# BSD 3-Clause "New" or "Revised" License 2024-04-04 09:36:37 |
| 107 |
Bayer-Group/COLID-Scheduler-Service The scheduler service repository is part of the Corporate Linked Data Catalog - short: COLID - application. It sets up recurring jobs for user notifications and analytics. cloud-native, colid, data-catalog, data-catalogue, elasticsearch, fair, fair-data, findable, linked-data, rdf, shacl, triplestore 4 1 C# BSD 3-Clause "New" or "Revised" License 2024-04-04 09:35:21 |
| 107 |
Bayer-Group/GeospatialKit Geospatial iOS framework for GeoJson with mapping, imaging, and everything from GeospatialSwift 4 5 Swift Other 2024-02-20 16:12:01 |
| 107 |
Bayer-Group/mitochondrial-tox Supporting information from "Predicting the Mitochondrial Toxicity of Small Molecules: Insights From Mechanistic Assays and Cell Painting Data" by Marina Garcia de Lomana, Paula Andrea Marin Zapata, and Floriane Montanari bayer-reg-undefined, bayer-restricted, beat-undefined 4 1 Jupyter Notebook BSD 3-Clause "New" or "Revised" License 2023-07-10 10:31:04 |
| 107 |
Bayer-Group/open-nucleotides Deep Learning Models Recognizing Genomic Regulatory Code 4 Python BSD 3-Clause "New" or "Revised" License 2023-01-06 23:52:12 |
| 107 |
Bayer-Group/express-client-validator An express middleware to validate route clients 4 3 CoffeeScript BSD 3-Clause "New" or "Revised" License 2022-12-30 23:24:41 |
| 107 |
Bayer-Group/prom-cf-sd 4 2 Go Other 2017-06-19 18:37:40 |
| 107 |
Bayer-Group/glass-key This is a common library which supports Play and Spray communicating as clients and resources for OAuth2. 4 1 Scala Other 2016-03-10 21:35:29 |
| 107 |
bayer-science-for-a-better-life/plant-triplet-net 4 1 Python 2020-08-04 08:56:15 |
| 107 |
AC-BO-Hackathon/project-surface-science-syndicate Bayesian optimization of corrosion inhibitor molecules by surface-science-syndicate 4 Jupyter Notebook MIT License 2024-04-08 10:38:46 |
| 108 |
Novartis/TAT Transcriptomics-to-Activity Transformer (TAT) is a deep learning model to predict compound bioactivity in a dose-response assay using compound-induced transcriptomic profiles over concentration. 3 1 Python Apache License 2.0 2024-01-30 00:17:23 |
| 108 |
Novartis/peakCombiner The fully R based tool peakCombiner is a user-friendly, transparent, modular and customizable package with the purpose to create a consensus peak file from genomic input regions. The aim is to allow even novice R users to create good quality combined peak sets to be used as the starting point for most downstream differential analyses. 3 1 R Other 2023-10-09 23:38:27 |
| 108 |
Novartis/GreyChemicalMatter A pipeline to identify bioactive small molecules with likely novel modes of actions and dynamic SAR from historic cell-HTS profiles, with an example application and hitlist from PubChem data 3 Jupyter Notebook MIT License 2023-06-09 22:33:49 |
| 108 |
Novartis/TRAWLING Description: Build TRAWLING: a Transcriptome Reference AWare of spLicING events 3 R MIT License 2021-12-09 08:27:42 |
| 108 |
Merck/AbPROP 3 1 Python Apache License 2.0 2024-03-23 17:22:28 |
| 108 |
Merck/simvaxpmx Elucidating vaccine efficacy using a correlate of protection, demographics, and logistic regression 3 1 R Other 2024-02-29 13:58:07 |
| 108 |
Merck/TraceTrack 3 7 Python GNU General Public License v3.0 2023-07-26 19:18:28 |
| 108 |
Merck/gsdmvn The goal of gsdmvn is to enable group sequential trial design for time-to-event endpoints under non-proportional hazards assumptions. 3 5 R GNU General Public License v3.0 2023-06-14 17:51:05 |
| 108 |
Merck/Real-world-Time-to-Treatment-Discontinuation-Prediction-Algorithm Real-world Time to Treatment Discontinuation Prediction Algorithm 3 2 Perl Apache License 2.0 2022-12-08 21:03:06 |
| 108 |
Merck/Message-Hub The Messaging Orchestration HUB will be responsible for providing a connection between an organization's GS1 EPCIS-based track and trace data source system (for example ATTP) and the blockchain networks that require data relevant to product serialization and track & trace. 3 2 TypeScript Apache License 2.0 2020-12-02 22:44:20 |
| 108 |
Merck/curation-open-source This wrapper enables the HPC execution of FDA DB curation and list all the step in a programming language style. 3 2 Jupyter Notebook MIT License 2020-09-03 20:42:57 |
| 108 |
insightsengineering/teal.goshawk Modules that produce web interfaces through which longitudinal visualizations can be dynamically modules, nest, r 3 2 R Other 2024-06-06 12:21:06 |
| 108 |
insightsengineering/tern.rbmi Create TLGs using rbmi and tern graphs, listings, r, tables 3 1 R Other 2024-06-06 11:34:18 |
| 108 |
insightsengineering/dunlin Tools for Clinical Trial Data Wrangling 3 R Other 2024-05-24 00:48:27 |
| 108 |
insightsengineering/teal.transform Reproducible transform and merge module for teal applications merge, modules, nest, r, transform 3 2 R Other 2024-05-23 03:40:13 |
| 108 |
insightsengineering/staged-dependencies-action Github Action to implement R development stages for package development github-actions, r, renv, staged-dependencies, system-dependencies 3 2 R Apache License 2.0 2024-05-17 12:06:44 |
| 108 |
insightsengineering/depository A depository for previously released R packages stemming from this organization. r, repository 3 1 HTML 2024-03-15 15:42:46 |
| 108 |
insightsengineering/unihtee Tools for uncovering treatment effect modifiers in high-dimensional data. 3 R Other 2024-03-15 15:38:34 |
| 108 |
insightsengineering/bioc-check-action Github Action that runs Bioconductor-specific R package checks with BiocCheck. actions, bioconductor, github-actions, r 3 2 R Apache License 2.0 2024-03-15 15:35:18 |
| 108 |
genentech/contrastive-ops 3 1 Jupyter Notebook Apache License 2.0 2023-09-06 19:03:56 |
| 108 |
genentech/g_ani 3 1 Python MIT License 2023-06-22 17:06:01 |
| 108 |
genentech/docker-php (forked from: dockette/php) 🐳 Dockette PHP 5.6 / 7.0 / 7.1 + FPM + Composer (Prestissimo) 3 6 16 BSD-3-Clause license 2018-05-22 17:55:00 |
| 108 |
bedapub/GeMS Gene set management system based on a MongoDB backend 3 1 Python 2024-04-17 00:23:05 |
| 108 |
bedapub/besca_publication_results 3 Jupyter Notebook 2021-10-28 12:01:37 |
| 108 |
bedapub/bescape BESCApe is a cell deconvolution package. 3 1 HTML GNU General Public License v3.0 2021-03-03 17:07:06 |
| 108 |
Roche/rpsftmPlus R package that extends the rpsftm package with some useful default reports and functions to facilitate sensitivity analysis. Covering descriptive, diagnostic and reporting aspects. health-economic-evaluation, health-economics, hta, r, survival-analysis 3 2 R Apache License 2.0 2022-07-26 10:16:39 |
| 108 |
bioinform/swifr 3 1 C++ Other 2021-10-25 18:08:12 |
| 108 |
AstraZeneca/MCPL Official implementation for "An image is worth multiple words: discovering object level concepts using multi-concepts prompts learning" [ICML 2024]] 3 1 Python Apache License 2.0 2024-05-27 10:25:57 |
| 108 |
AstraZeneca/maraca R package for the creation of "maraca" plots 3 R Other 2024-03-18 10:50:58 |
| 108 |
AstraZeneca/Machine-Learning-for-Predicting-Targeted-Protein-Degradation The code was developed for training diverse ML and DL models to predict PROTACs degradation. Data cleaning for two public datasets, PROTAC-DB and PROTACpedia, are also included. PROTACs are of high interest for all disease areas of AZ and thus predicting their degradation is of general interest. 3 1 Jupyter Notebook 2023-10-31 14:04:12 |
| 108 |
AstraZeneca/magnus-extensions Extensions packages for magnus 3 1 Python Apache License 2.0 2023-08-28 05:02:29 |
| 108 |
AstraZeneca/PatientSafetyKG 3 2 Python Apache License 2.0 2022-08-02 16:53:10 |
| 108 |
AstraZeneca/fragler 3 1 Python Apache License 2.0 2022-07-06 12:11:23 |
| 108 |
MolecularAI/reinforcement-learning-active-learning 3 Python Apache License 2.0 2024-04-15 12:12:26 |
| 108 |
AstraZeneca-NGS/MultiQC (forked from: MultiQC/MultiQC) Aggregate results from bioinformatics analyses across many samples into a single report. 3 19 Python GPL-3.0 license 2023-07-06 10:52:28 |
| 108 |
AstraZeneca-Code-Club/into-the-tidyverse (forked from: THargreaves/into-the-tidyverse) Slides, exercise sheets, and solution sheets for my course, 'Into the Tidyverse' 3 2 2 HTML MIT license 2021-03-08 18:29:42 |
| 108 |
Sanofi-Public/LipoBART 3 Jupyter Notebook Other 2024-06-06 13:50:10 |
| 108 |
Sanofi-Public/spatialone-pipeline Spatial One bioinformatics, python, spatial-biology, spatialomics 3 Python Other 2024-05-13 15:43:29 |
| 108 |
GSK-AI/image2omics Accompanying code for Image2Omics cell-painting, deep-learning, multi-omics 3 Python Apache License 2.0 2023-08-29 13:19:36 |
| 108 |
Gilead-BioStats/qcthat A quality control framework for R packages used in Clinical Trials 3 HTML Apache License 2.0 2024-02-07 22:25:29 |
| 108 |
biosustain/bayesian_statistics_for_computational_biology A Bayesian statistics course for computational biologists 3 1 HTML Creative Commons Attribution 4.0 International 2024-05-03 15:47:15 |
| 108 |
biosustain/CO2_fixation_models Process optimization by combining temperature-dependent mass transfer and metabolic models. 3 Jupyter Notebook Apache License 2.0 2023-04-12 14:33:51 |
| 108 |
biosustain/GRASP GRASP allows the user to build kinetic models of cell metabolism and analyse them. 3 1 HTML Other 2023-02-11 02:04:10 |
| 108 |
biosustain/sanger-sequencing 3 3 Python Apache License 2.0 2020-02-11 00:34:00 |
| 108 |
biosustain/memote-meta-study Test metabolic models in the wild and rank them according to popularity and how easily they can be improved. 3 2 HTML Apache License 2.0 2020-01-28 12:31:35 |
| 108 |
biosustain/growth-profiler-align Growth profiler image analysis 3 1 Python 2018-01-30 10:50:23 |
| 108 |
biosustain/flask-venom A Flask extension for Venom RPC 3 2 Python MIT License 2017-05-11 16:31:14 |
| 108 |
biosustain/neighbor-joining Rapid Neighbor-Joining phylogenetic tree creation method implementation for Node.js neighbor-joining, nodejs, phylogenetic-trees, phylogenetics 3 5 JavaScript 2016-07-22 11:26:42 |
| 108 |
NovoNordisk-OpenSource/critical-path Implementation of the Critical Path method 3 C# MIT License 2024-05-27 12:14:58 |
| 108 |
Boehringer-Ingelheim/TSO500R (forked from: eastgenomics/TSO500R) R package for data analysis with CombinedVariantOutput.tsv data 3 2 R MIT license 2024-06-03 09:23:55 |
| 108 |
Boehringer-Ingelheim/eslint-config This is the shared eslint configuration used at Boehringer Ingelheim for code styling eslint, eslint-config, eslintrc, hacktoberfest 3 1 JavaScript MIT License 2024-05-29 15:14:05 |
| 108 |
Boehringer-Ingelheim/TOXPR 3 Jupyter Notebook MIT License 2024-01-25 12:41:14 |
| 108 |
Boehringer-Ingelheim/decider The decider R package: decision making in multiple-arm oncology dose escalation trials with logistic regression bayesian-statistics, blrm, dose-escalation, oncology, trial-simulation 3 R Apache License 2.0 2023-08-28 14:15:42 |
| 108 |
Boehringer-Ingelheim/msmsimr Simulate multi-stage data 3 R Apache License 2.0 2023-02-28 14:17:25 |
| 108 |
Bayer-Group/text-to-sql-epi-ehr-naacl2024 Code for Retrieval augmented text-to-SQL generation for epidemiological question answering using electronic health records generative-ai, llm, rag, text-generation, text-to-sql 3 Python MIT License 2024-05-15 11:39:54 |
| 108 |
Bayer-Group/fRegGANbeat-undefined 3 Python BSD 3-Clause "New" or "Revised" License 2024-01-23 02:39:31 |
| 108 |
Bayer-Group/BIC-DetectoRbayer-not-classified, bayer-reg-none, beat-not-applicable 3 R GNU General Public License v3.0 2022-12-01 16:58:11 |
| 108 |
Bayer-Group/r-cytoscape.js An HTMLWidgets package for CytoscapeJS which can be used to produce standalone figure or for embedding in Shiny applications. 3 3 JavaScript Apache License 2.0 2016-02-18 17:39:23 |
| 108 |
Bayer-Group/logstash-configs Logstash config files 3 2 2016-01-14 19:13:05 |
| 108 |
bayer-science-for-a-better-life/mlr-challenges-frankenbody Bayer's MLR antibody data modelling challenge 3 1 Python 2023-08-02 14:44:14 |
| 108 |
bayer-science-for-a-better-life/openfold (forked from: aqlaboratory/openfold) Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2 3 Python Apache-2.0 license 2022-11-04 07:53:35 |
| 108 |
bayer-science-for-a-better-life/hbond-benchmark Adding H-donor-acceptor bonds to GNNs 3 1 Jupyter Notebook MIT License 2022-01-27 15:09:00 |
| 108 |
bayer-science-for-a-better-life/mtnngc_admet 3 1 Python Other 2021-04-23 08:41:26 |
| 108 |
bayer-science-for-a-better-life/grami-example Example project showing how to use GraMi 3 Java 2021-02-19 09:54:21 |
| 109 |
pfizer-opensource/graphs-renderer A javascript library that provides rendering capabilities for CFD, scatterplot and Histogram graphs. It uses d3js for graph rendering. 2 1 JavaScript Apache License 2.0 2024-06-04 16:33:09 |
| 109 |
pfizer-opensource/TRR-ACoP2022-Public Public release version of ACoP2022 2 2 Julia Apache License 2.0 2024-05-10 03:57:49 |
| 109 |
pfizer-opensource/pfaster pneumococcal FASTA serotype calling 2 2 Python Apache License 2.0 2024-03-22 17:29:48 |
| 109 |
pfizer-opensource/MLAST Mouse Lung Automated Segmentation Tool 2 1 MATLAB Apache License 2.0 2023-03-10 15:55:46 |
| 109 |
pfizer-opensource/CTMC-NAFLD-fibrosis 2 MATLAB Apache License 2.0 2023-02-14 17:59:57 |
| 109 |
pfizer-opensource/mitochondria-metabolism This is a mechanistic model of myocardial mitochondrial metabolism including oxidative phosphorylation, 2 MATLAB Apache License 2.0 2022-11-11 15:41:13 |
| 109 |
PfizerRD/cirrocumulus (forked from: ramyagamini/cirrocumulus) Bring your single-cell data to life 2 1 2 JavaScript BSD-3-Clause license 2023-07-19 20:21:47 |
| 109 |
PfizerRD/MolGAN (forked from: nicola-decao/MolGAN) Tensorflow implementation of MolGAN: An implicit generative model for small molecular graphs (https://arxiv.org/abs/1805.11973) 2 3 Python 2018-10-01 08:49:56 |
| 109 |
openPfizer/QSP_model_COVID19 Generates figures in the manuscript titled A Quantitative Systems Pharmacology Model of the Pathophysiology and Treatment of COVID-19 Predicts Optimal Timing of Pharmacological Interventions 2 MATLAB Apache License 2.0 2022-03-09 13:25:24 |
| 109 |
abbvie-external/OmicNavigatorWebApp 2 2 JavaScript MIT License 2024-04-15 20:10:24 |
| 109 |
Novartis/Novartis.github.io Public gallery of NIBR Open Source projects 2 3 HTML 2023-06-09 16:07:59 |
| 109 |
Novartis/solid-tumor-CHIP Clonal hematopoiesis detection in cancer patients using cell free DNA sequencing 2 HTML MIT License 2023-02-07 19:38:16 |
| 109 |
Novartis/watMD Water tool for molecular dynamics that calculates solvation fields for interaction between water and non-solvant molecules 2 MIT License 2021-05-12 14:46:01 |
| 109 |
Novartis/mvAC50 AC50 potencies from multivariate assay readouts like gene signatures 2 R Apache License 2.0 2020-06-19 17:23:52 |
| 109 |
Novartis/sidtoolbox Subgroup identification toolbox 2 R MIT License 2019-09-16 10:12:55 |
| 109 |
Novartis/nxc-chess 2 1 JavaScript Apache License 2.0 2016-09-27 18:00:43 |
| 109 |
Merck/polo POLO: web interface to MARCO-scored crystallization images 2 5 Python MIT License 2023-05-01 21:23:54 |
| 109 |
Merck/deker This library is made to perform feature selection based on a method originally proposed in by Sun et al. [1]. This library specifically relates to the methodology described in [2], named DEKER for decomposed kernel regression, which includes methods for identifying optimal hyperparameter values. This library was also designed for use in the cont… 2 3 C++ Other 2022-06-01 19:21:33 |
| 109 |
Merck/OMOP-CONCEPT-EMBEDDING 2 3 Python Apache License 2.0 2022-05-06 18:17:45 |
| 109 |
Merck/helm-visualisation 2 2 JavaScript MIT License 2021-10-27 20:37:31 |
| 109 |
insightsengineering/scda.test Package that runs tests for tern and scda clinical-trials, graphs, listings, nest, outputs, r, tables 2 R Other 2024-06-06 16:33:51 |
| 109 |
insightsengineering/covtracer-action Github Action based on the Covtracer R package actions, coverage, covtracer, r, traceability 2 R Apache License 2.0 2024-04-29 16:23:12 |
| 109 |
insightsengineering/disk-space-reclaimer (forked from: jlumbroso/free-disk-space) GitHub Action to free disk space on a Ubuntu runners 🗑️ disk-space, github-actions, ubuntu 2 1 1 Shell MIT license 2024-04-29 16:22:46 |
| 109 |
insightsengineering/r-pkgdown-multiversion Github Action to generate multiple versions of pkgdown docs for R packages github-actions, pkgdown, r 2 R Apache License 2.0 2024-03-15 16:04:34 |
| 109 |
insightsengineering/pip-action (forked from: BSFishy/pip-action) Github Action to install Python PIP packages 🐍 📦 action, dependency-management, installer, pip, python 2 1 1 TypeScript MIT license 2024-03-15 16:01:43 |
| 109 |
insightsengineering/presidio-action Github Action that analyze Text for PII Entities with Microsoft Presidio framework. actions, pii, presidio, python 2 2 Apache License 2.0 2024-03-15 15:40:27 |
| 109 |
insightsengineering/nesttemplate pkgdown template for NEST packages nest, pkgdown-template, r, template 2 JavaScript Other 2024-03-15 15:34:22 |
| 109 |
insightsengineering/framework-scientific-apps AMIA 2021 - Case study in the development of a framework for quality and reproducibility in inner-sourced packages and self-service analytic dashboards abstracts, conferences 2 TeX 2024-03-15 15:30:01 |
| 109 |
genentech/topological_PRM_for_lungHRCT Lung image analysis pipeline for topological PRM maps copd, hrct, lung, minkowski-functionals, parametric-response-mapping, topological-data-analysis 2 Python Apache License 2.0 2023-08-27 16:23:56 |
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genentech/pviz-app-vep 2 2 JavaScript Other 2015-03-23 11:24:01 |
| 109 |
genentech/pviz-app-proteomics-3d 2 1 JavaScript Other 2014-04-18 21:48:01 |
| 109 |
bedapub/bksnake Public version of bksnake - biokit snakemake - bulk RNASeq Snakemake workflow 2 Python 2024-05-31 10:37:31 |
| 109 |
bedapub/HBVouroboros HBVouroboros automates sequencing-based HBV genotyping and expression profiling bioinformatics, expression, genotyping, hbv, snakemake, snakemake-workflow 2 1 Python GNU General Public License v3.0 2024-05-21 05:55:11 |
| 109 |
bedapub/PMDA-Summer-School (forked from: LuisaMohr/PMDA-Summer-School) Public website of Roche PMDA Summer School 2 2 1 GPL-3.0 license 2024-05-17 08:14:35 |
| 109 |
bedapub/kinex Kinex infers causal kinases from phosphoproteomics data 2 Python GNU General Public License v3.0 2023-12-07 18:58:13 |
| 109 |
bedapub/ribiosNGS Next-generation sequencing data analysis with ribios 2 2 R 2023-10-03 17:03:55 |
| 109 |
bedapub/refsnake Snakemake workflow to generate reference genomes and annotations 2 Python GNU General Public License v3.0 2023-09-20 15:34:57 |
| 109 |
bedapub/dynamic-form 2 Python GNU General Public License v3.0 2023-09-12 07:20:57 |
| 109 |
bedapub/bios-to-go Static files of the BIOS, aka Bioinfo-C, library 2 C GNU Lesser General Public License v3.0 2023-04-25 14:58:58 |
| 109 |
bedapub/microbiome10XVisium 2 R Other 2023-04-13 13:52:17 |
| 109 |
Roche/foxops-client-python 2 Python Apache License 2.0 2024-02-19 02:56:49 |