Skip to content
This repository was archived by the owner on Feb 5, 2024. It is now read-only.
/ stg-embedding Public archive

Embedding spike times from a small neural circuit to map how collective dynamics change under different conditions

License

Notifications You must be signed in to change notification settings

sg-s/stg-embedding

Folders and files

NameName
Last commit message
Last commit date

Latest commit

529b611 · Feb 3, 2023
Nov 17, 2021
Jun 30, 2021
Oct 29, 2021
May 5, 2021
May 7, 2021
Aug 30, 2021
Aug 7, 2020
Oct 22, 2020
Nov 16, 2020
Jun 1, 2021
Aug 20, 2020
Aug 25, 2020
Feb 26, 2022
May 12, 2020
Jul 11, 2021
Feb 3, 2023
Jul 11, 2021
Nov 1, 2020
Apr 28, 2020
Feb 27, 2022

Repository files navigation

stg embedding

This repository contains code to reproduce every figure in

Mapping circuit dynamics during function and dysfunction

Installation and prerequisites

You will need MATLAB.

Download the following repositories and add them to your MATLAB path:

https://github.com/sg-s/stg-embedding
https://github.com/sg-s/srinivas.gs_mtools
https://github.com/sg-s/crabsort
https://github.com/KlugerLab/FIt-SNE

Data

The raw data is >30TB and getting it into your hands is not easy. Instead we provide reduced data consisting of spiketimes, metadata and various annotations. This should allow you to reproduce every figure in the paper.

To get the data, download it from Zenodo.

How to regenerate figures

  1. First, download the code and add to path (see above).
  2. Then, download the data and put it in a folder called "reduced-data" within your "stg-embedding" folder. You will have to create this if needed.
  3. Then, navigate to the paper-figures folder and run any script to generate that figure. For example, to generate Figure 2, run: fig_embedding.

License

GPL v3

About

Embedding spike times from a small neural circuit to map how collective dynamics change under different conditions

Topics

Resources

License

Stars

Watchers

Forks

Releases

No releases published

Packages

No packages published