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Remove VCF support #1264

Merged
merged 9 commits into from
Oct 10, 2024
Merged

Remove VCF support #1264

merged 9 commits into from
Oct 10, 2024

Commits on Oct 2, 2024

  1. Add a test to check sgkit can read vcf2zarr datasets

    @tomwhite
    tomwhite committed Oct 2, 2024
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  2. Remove sgkit/tests/io/vcf

    @tomwhite
    tomwhite committed Oct 2, 2024
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  3. Remove sgkit/io/vcf

    @tomwhite
    tomwhite committed Oct 2, 2024
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  4. Remove vcf_to_zarr usage

    @tomwhite
    tomwhite committed Oct 2, 2024
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  5. Remove sgkit/tests/test_vcfzarr_reader.py

    @tomwhite
    tomwhite committed Oct 2, 2024
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  6. Remove read_scikit_allel_vcfzarr

    @tomwhite
    tomwhite committed Oct 2, 2024
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  7. Remove VCF docs and refer to bio2zarr and vcztools

    @tomwhite
    tomwhite committed Oct 2, 2024
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  8. Update changelog

    @tomwhite
    tomwhite committed Oct 2, 2024
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Commits on Oct 8, 2024

  1. Use dev version of bio2zarr for testing NumPy 2

    @tomwhite
    tomwhite committed Oct 8, 2024
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