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35 Open 47 Closed
35 Open 47 Closed
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Issues list

TYPE not supported in filtering
#166 opened Apr 2, 2025 by jeromekelleher
genotype special values not working in filtering
#165 opened Apr 2, 2025 by jeromekelleher
filtering on FILTER not working bug Something isn't working
#164 opened Apr 2, 2025 by jeromekelleher
1
Missing data not handled correctly in filter expressions bug Something isn't working
#163 opened Apr 2, 2025 by jeromekelleher
Document CLI commands
#161 opened Mar 28, 2025 by jeromekelleher 0.0.2
Support view-bgen
#159 opened Mar 25, 2025 by jeromekelleher
Support view-plink2
#158 opened Mar 25, 2025 by jeromekelleher
1
Add bcftools-style pre-filtering to plink1.9-vcf
#156 opened Mar 24, 2025 by jeromekelleher 0.0.2
2
Implement minimal option set from plink --vcf
#155 opened Mar 24, 2025 by jeromekelleher 0.0.2
Add some filtering options for plink1.9-vcf
#154 opened Mar 24, 2025 by jeromekelleher 0.0.2
1
Document plink command
#153 opened Mar 24, 2025 by jeromekelleher 0.0.2
Optimise vcz_encode_plink
#152 opened Mar 24, 2025 by jeromekelleher
Add coveralls
#151 opened Mar 24, 2025 by jeromekelleher
Add documentation site
#142 opened Mar 5, 2025 by jeromekelleher
@benjeffery
2
Don't stack trace on I/O errors
#141 opened Feb 20, 2025 by jeromekelleher 0.0.2
Use Zarr asyncio to retrieve chunks concurrently enhancement New feature or request
#131 opened Feb 3, 2025 by tomwhite
1
Document how to install with pipx documentation Improvements or additions to documentation
#130 opened Feb 3, 2025 by tomwhite
Cloud store support
#129 opened Jan 30, 2025 by jeromekelleher
10
Add --delocalise-alleles option for VCF output enhancement New feature or request
#125 opened Jan 17, 2025 by jeromekelleher
query -f "%GT" does not raise error bug Something isn't working
#119 opened Jan 14, 2025 by jeromekelleher
Support multiple input arguments in vcztools query enhancement New feature or request
#118 opened Jan 14, 2025 by jeromekelleher
Make exit status on error same as bcftools enhancement New feature or request
#117 opened Jan 14, 2025 by jeromekelleher
Python API for iterating over variants
#112 opened Dec 5, 2024 by percyfal
9
Replace PyRanges with NCLS to avoid pandas dependency
#111 opened Dec 3, 2024 by tomwhite
3
Make robust to non-essential missing fields with clear interpretation
#107 opened Nov 21, 2024 by jeromekelleher
ProTip! Exclude everything labeled bug with -label:bug.