BUG: longread fix

shandley · Dec 17, 2024 · e96ca0b · e96ca0b
1 parent 30f1e45
commit e96ca0b
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/hecatomb/snakemake/workflow/rules/assembly/longreads.smk b/hecatomb/snakemake/workflow/rules/assembly/longreads.smk
@@ -34,7 +34,7 @@ rule lr_cross_assembly:
 rule canu_sample_assembly:
     """Per-sample assembly with canu; also works for unmapped rescue reads"""
     input:
-        os.path.join(dir["out"]["trim"], "{sample}" + "_RS" + config["args"]["hostStr"] + ".fastq.gz")
+        os.path.join(dir["out"]["trim"], "{sample}" + "_S" + config["args"]["hostStr"] + ".fastq.gz")
     output:
         ctg = os.path.join(dir["out"]["assembly"],"{sample}","{sample}.contigs.fasta"),
         ctgq = os.path.join(dir["out"]["assembly"],"{sample}","{sample}.contigs.uniq.fasta"),