Pipeline for genome assembly of eukaryotic organisms.
The first test cases are with smelts:
- Built with: Hypomesus transpacificus (delta smelt)
- Test case: Spirinchus thaleichthys (longfin smelt)
Data types:
- longreads (PacBio)
- pseudo-longreads (10X)
- hi-c (Phase & Arima)
dag.pdf built from snakemake --forceall --dag | dot -Tpdf > dag.pdf
rulecall.pdf built from snakemake --forceall --rulegraph | dot -Tpdf > rulegraph.pdf