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A set of general optimisations#916

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shawnlaffan merged 19 commits intomastershawnlaffan/biodiverse:masterfrom optimise_calc_abcshawnlaffan/biodiverse:optimise_calc_abcCopy head branch name to clipboardFeb 12, 2024

+274-145

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Commits on Feb 7, 2024

• optimise _calc_abc

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• _calc_abc: more micro-optimisations

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• _calc_abc: micro-optimise the label_hash loop

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• _calc_abc: micro-optimise label_list loop

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Commits on Feb 8, 2024

• _calc_abc: avoid some looping when assigning to empty hashes

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• hierarchical labels: remove calc_abc pre_calc

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Commits on Feb 9, 2024

• Indices: add _calc_abc_one_element

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• micro-optimise Spatial::compare

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• Spatial::compare: reorder some conditions

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• micro-optimise BaseData::get_range

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Commits on Feb 11, 2024

• BaseData::transfer_element_properties return early if no properties

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• BaseStruct.pm: better feedback in some error messages

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• calc_abc[123]: only use one element variants if there is one element

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• Randomisation tests: ensure spatial index is used for a spatial analysis

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• Indices: faster range hash generation

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• add array args variants of get_list_ref

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• calc_abc[123]: improve one element variant detection

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• BaseStruct.pm: Add array args variant of exists_list

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Commits on Feb 12, 2024

• rand_curveball: no need to sort the shorter swap list

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