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Faster cluster matrix creation#920

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shawnlaffan merged 15 commits intomastershawnlaffan/biodiverse:masterfrom matrices_2024shawnlaffan/biodiverse:matrices_2024Copy head branch name to clipboardFeb 22, 2024

+296-170

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Commits on Feb 20, 2024

• Micro-optimise a few Matrix methods

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Commits on Feb 21, 2024

• Matrices: move get_element_values into Base.pm

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• Matrix.pm: avoid a while-each loop

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• Matrix.pm: add array args variant of get_value_index_key

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• _calc_abc: properly disable redundant code block

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• Indices.pm: pre/post calcs: avoid creating %args when it is not used

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• Cluster.pm: faster checks for existing value in other matrices

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• Localise some variables

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• Indices: no need to call post_calc dependencies if none are defined

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• Indices.pm: streamline some dependency handling in run_dependencies

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• micro-optimise Matrix::get_value_index_key_aa

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• Indices: add pairwise calc_abc variant for singleton element lists

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• Indices: use pairwise calcs with abc2&3, centralise via a dispatcher

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• calc_rw_turnover: use calc_abc2 as a prereq

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Commits on Feb 22, 2024

• Indices: simplify dependencies for RW turnover

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