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Samtools for MicMap version 2.0 from 23rd February 2020

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@c4chris c4chris released this 24 Feb 13:29
· 437 commits to develop since this release
MicMap_2_20200223
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Samtools for MicMap version 2.0

This release accompanies the corresponding release of the MicMap tool https://github.com/sib-swiss/micmap/releases/tag/MicMap_2_20200223

Please look into the release of MicMap to obtain a Singularity container preloaded with the necessary binary programs, and get the accompanying data from our website https://bix.unil.ch/ref/

Example

samtools ADVIEW -G /data6/dm6/dm6.bin -1 /tmp/RNAseq/ctcf0r3_dm6.bam -2 /tmp/cntnr_tst/ctcf0r3_dm6.bam -3 /tmp/chris/HiC/HIC9565_c50_dm6.bam -4 /tmp/chris/ChIP/Cp190_KO_Cp190_1_c50_dm6.bam -5 /tmp/ChIPseq/ChIPseqCTC_Cp190_KO_Cp190_1.bam -c 3 -p 7356310 -s /tmp/ChIPseq/tst_snp.txt
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