fix -- in docs

doc/source/man/densify_Bragg.rst

@@ -17,8 +17,8 @@ for subsequent analysis.
 Usage
 -----
 
-densify_Bragg [-h] [-V] [-v] [--debug] [-l] [-o OUTPUT] [-O FORMAT]
-[-D DUMMY] [--dry-run] [-N NOISY] [IMAGE ...]
+densify_Bragg [-h] [-V] [-v] [-\-debug] [-l] [-o OUTPUT] [-O FORMAT]
+[-D DUMMY] [-\-dry-run] [-N NOISY] [IMAGE ...]
 
 Positional arguments:
 ---------------------
@@ -29,40 +29,40 @@ IMAGE
 Pptions:
 --------
 
-**-h**, **--help**
+**-h**, **-\-help**
    show this help message and exit
 
-**-V**, **--version**
+**-V**, **-\-version**
    output version and exit
 
-**-v**, **--verbose**
+**-v**, **-\-verbose**
    show information for each conversions
 
-**--debug**
+**-\-debug**
    show debug information
 
 Main arguments:
 ---------------
 
-**-l**, **--list**
+**-l**, **-\-list**
    show the list of available output formats and exit
 
-**-o** OUTPUT, **--output** OUTPUT
+**-o** OUTPUT, **-\-output** OUTPUT
    output filename, by default {baseame}_densify.h5
 
-**-O** FORMAT, **--output-format** FORMAT
+**-O** FORMAT, **-\-output-format** FORMAT
    output format among ``lima``, ``eiger`` ...
 
-**-D** DUMMY, **--dummy** DUMMY
+**-D** DUMMY, **-\-dummy** DUMMY
    Set masked values to this dummy value
 
 optional behaviour arguments:
 -----------------------------
 
-**--dry-run**
+**-\-dry-run**
    do everything except modifying the file system
 
-**-N** NOISY, **--noise** NOISY
+**-N** NOISY, **-\-noise** NOISY
    Noise scaling factor, from 0 to 1, set to 0 to disable the noise
    reconstruction
 

doc/source/man/eiger2cbf.rst

@@ -5,16 +5,16 @@ Purpose
 -------
 
 Convert a multiframe HDF5 Eiger data file into several CBF files.
- 
-Portable image converter based on FabIO library to export Eiger frames (``lima`` or ``eiger``) 
+
+Portable image converter based on FabIO library to export Eiger frames (``lima`` or ``eiger``)
 to CBF which mimic the header of a Dectris Pilatus detector.
 
 Usage:
 ------
 
-eiger2cbf [-h] [-V] [-v] [--debug] [-o OUTPUT] [-m MASK] [-O OFFSET] [-D DUMMY] [--pilatus] [--dry-run] [-e ENERGY]
-[-w WAVELENGTH] [-d DISTANCE] [-b BEAM BEAM] [--alpha ALPHA] [--kappa KAPPA] [--chi CHI] [--phi PHI]
-[--omega OMEGA] [--rotation ROTATION] [--transpose] [--flip-ud] [--flip-lr]
+eiger2cbf [-h] [-V] [-v] [-\-debug] [-o OUTPUT] [-m MASK] [-O OFFSET] [-D DUMMY] [-\-pilatus] [-\-dry-run] [-e ENERGY]
+[-w WAVELENGTH] [-d DISTANCE] [-b BEAM BEAM] [-\-alpha ALPHA] [-\-kappa KAPPA] [-\-chi CHI] [-\-phi PHI]
+[-\-omega OMEGA] [-\-rotation ROTATION] [-\-transpose] [-\-flip-ud] [-\-flip-lr]
 [IMAGE ...]
 
 Positional arguments:
@@ -26,79 +26,79 @@ IMAGE
 Options:
 ++++++++
 
-**-h**, **--help**
+**-h**, **-\-help**
    show this help message and exit
 
-**-V**, **--version**
+**-V**, **-\-version**
    output version and exit
 
-**-v**, **--verbose**
+**-v**, **-\-verbose**
    show information for each conversions
 
-**--debug**
+**-\-debug**
    show debug information
 
 Main arguments:
 +++++++++++++++
 
-**-o** OUTPUT, **--output** OUTPUT
+**-o** OUTPUT, **-\-output** OUTPUT
    output directory and filename template:
    ``eiger2cbf/frame_{index:04d}.cbf``
 
-**-m** MASK, **--mask** MASK
+**-m** MASK, **-\-mask** MASK
    Read masked pixel from this file
 
-**-O** OFFSET, **--offset** OFFSET
-   index offset, CrysalisPro likes indexes to start at 1, 
+**-O** OFFSET, **-\-offset** OFFSET
+   index offset, CrysalisPro likes indexes to start at 1,
    Python starts at 0 (default)
 
-**-D** DUMMY, **--dummy** DUMMY
+**-D** DUMMY, **-\-dummy** DUMMY
    Set masked values to this dummy value
 
-**--pilatus**
+**-\-pilatus**
    Select an image shape similar to Pilatus detectors for compatibiliy
    with Crysalis
 
 Optional behaviour arguments:
 +++++++++++++++++++++++++++++
 
-**--dry-run**
+**-\-dry-run**
    do everything except modifying the file system
 
 Experimental setup options:
 +++++++++++++++++++++++++++
 
-**-e** ENERGY, **--energy** ENERGY
+**-e** ENERGY, **-\-energy** ENERGY
    Energy of the incident beam in keV
 
-**-w** WAVELENGTH, **--wavelength** WAVELENGTH
+**-w** WAVELENGTH, **-\-wavelength** WAVELENGTH
    Wavelength of the incident beam in Angstrom
 
-**-d** DISTANCE, **--distance** DISTANCE
+**-d** DISTANCE, **-\-distance** DISTANCE
    Detector distance in meters
 
-**-b** BEAM BEAM, **--beam** BEAM BEAM
+**-b** BEAM BEAM, **-\-beam** BEAM BEAM
    Direct beam in pixels x, y
 
 Goniometer setup:
 -----------------
 
-**--alpha** ALPHA
-   Goniometer angle alpha value in deg. 
+**-\-alpha** ALPHA
+   Goniometer angle alpha value in deg.
    Constant, angle between kappa and omega.
 
-**--kappa** KAPPA
+**-\-kappa** KAPPA
    Goniometer angle kappa value in degrees or formula f(index)
    ``-80 + 2*index``
 
-**--chi** CHI
+**-\-chi** CHI
    Goniometer angle chi value in degres or formula f(index)
 
-**--phi** PHI
+**-\-phi** PHI
    Goniometer angle phi value (inner-most rotation) in degrees or formula f(index)
    ``-180+0.7*index``
 
-**--omega** OMEGA
+**-\-omega** OMEGA
    Goniometer angle omega value (outer-most rotation) in degrees or formula f(index)
    ``-180+0.5*index``
 
@@ -107,32 +107,32 @@ Image preprocessing:
 
 Images are patched onto the center of a square frame, and transformation are applied in this order:
 
-**--rotation** ROTATION
+**-\-rotation** ROTATION
    Rotate the initial image by this value in degrees. Must be a multiple
    of 90 degrees.
 
-**--transpose**
+**-\-transpose**
    Flip the x/y axis
 
-**--flip-ud**
+**-\-flip-ud**
    Flip the image upside-down
 
-**--flip-lr**
+**-\-flip-lr**
    Flip the image left-right
 
-Return code: 
+Return code:
 ++++++++++++
 
-- 0 means a success. 
-- 1 means the conversion contains a failure, 
+- 0 means a success.
+- 1 means the conversion contains a failure,
 - 2 means there was an error in the arguments
 
 Nota:
 -----
 
-Images are made square, so the beam center found in the CBF-files differs from the one entered. 
+Images are made square, so the beam center found in the CBF-files differs from the one entered.
 
 
-.. command-output:: eiger2cbf --help
+.. command-output:: eiger2cbf -\-help
     :nostderr:
-  
+