250104 fix preproc or load group #1086
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Was seeing the estimate_azss and t2p fields being written to both proc_aman and aman.preprocess but inv_var_flags and split_flags were only being written to proc_aman. I fixed this by adding a .copy() in pipe.run(). But now cfg check is failing when loading first layer and processing 2nd layer but not when processing through both.