0.2.0

sinanugur · Apr 27, 2023 · 3eeb3b8 · 3eeb3b8
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diff --git a/README.md b/README.md
@@ -1,4 +1,5 @@
-# <table border="0" cellspacing="0" cellpadding="0"> <tbody> <tr> <td rowspan="4"> <img src="cellsnake-logo-blue-small.png"> </td> <td> [![Docker Pulls](https://img.shields.io/docker/pulls/sinanugur/cellsnake)](https://hub.docker.com/r/sinanugur/cellsnake) [![Documentation Status](https://readthedocs.org/projects/cellsnake/badge/?version=latest)](https://cellsnake.readthedocs.io/en/latest/?badge=latest)  </td>  </tr> <tr>    <td> [![PyPI version](https://badge.fury.io/py/cellsnake.svg)](https://badge.fury.io/py/cellsnake) </td>  </tr>  <tr>    <td> [![Anaconda-Server Badge](https://anaconda.org/bioconda/cellsnake/badges/latest_release_relative_date.svg)](https://anaconda.org/bioconda/cellsnake) </td>  </tr>  <tr>    <td> [![Anaconda-Server Badge](https://anaconda.org/bioconda/cellsnake/badges/downloads.svg)](https://anaconda.org/bioconda/cellsnake)  </td>  </tr></tbody></table>
+# <table border="0" cellspacing="0" cellpadding="0"> <tbody> <tr> <td rowspan="4"> <img src="cellsnake-logo-blue-small.png"> </td> <td> [![Docker Pulls](https://img.shields.io/docker/pulls/sinanugur/cellsnake)](https://hub.docker.com/r/sinanugur/cellsnake) [![Documentation Status](https://readthedocs.org/projects/cellsnake/badge/?version=latest)](https://cellsnake.readthedocs.io/en/latest/?badge=latest)  </td>  </tr> <tr>    <td> [![PyPI version](https://badge.fury.io/py/cellsnake.svg)](https://badge.fury.io/py/cellsnake) </td>  </tr>  <tr>    <td> [![Anaconda-Server Badge](https://anaconda.org/bioconda/cellsnake/badges/latest_release_relative_date.svg)](https://anaconda.org/bioconda/cellsnake) </td>  </tr>  <tr>    <td> [![Anaconda-Server Badge](https://anaconda.org/bioconda/cellsnake/badges/downloads.svg)](https://anaconda.org/bioconda/cellsnake) [![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cellsnake/README.html)
+  </td>  </tr></tbody></table>
 
 A command line tool for easy and scalable single cell RNA sequencing analysis  
 

diff --git a/cellsnake/command_line.py b/cellsnake/command_line.py
@@ -36,7 +36,7 @@
 
 
 __author__ = 'Sinan U. Umu'
-__version__= '0.2.0.rc1'
+__version__= '0.2.0'
 __logo__="""
              _  _                     _           
             | || |                   | |          

diff --git a/cellsnake/scrna b/cellsnake/scrna
diff --git a/docs/cellsnake-logo-blue-small.png b/docs/cellsnake-logo-blue-small.png
diff --git a/docs/conf.py b/docs/conf.py
@@ -22,7 +22,7 @@
 author = 'Sinan U. Umu'
 
 # The full version, including alpha/beta/rc tags
-release = '0.2.0.rc1'
+release = '0.2.0'
 
 
 # -- General configuration ---------------------------------------------------

diff --git a/setup.py b/setup.py
@@ -20,7 +20,7 @@ def run(self):
 
 setup(
     name="cellsnake",
-    version="0.2.0.rc1",
+    version="0.2.0",
     packages=find_packages(exclude=('tests*','testing*')),
     long_description=long_description,
     long_description_content_type="text/markdown",
+1 −1		Dockerfile
+25 −7		workflow/Snakefile
+2 −0		workflow/rules/seurat.smk
+5 −0		workflow/scripts/scrna-go_analysis.R
+5 −1		workflow/scripts/scrna-kegg.R
+11 −4		workflow/scripts/scrna-microbiome-dimplot.R