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metadata
metadata
 
 
refs
refs
 
 
.gitignore
.gitignore
 
 
01-load_bulk_data.R
01-load_bulk_data.R
 
 
02-filter_qc_bulk_data.R
02-filter_qc_bulk_data.R
 
 
03-load_sc_data.R
03-load_sc_data.R
 
 
04-gcb_cell_type_markers.R
04-gcb_cell_type_markers.R
 
 
05a-dlbcl_alluvial.R
05a-dlbcl_alluvial.R
 
 
05b-lymphoma_pca.R
05b-lymphoma_pca.R
 
 
05c-lymphoma_deseq.R
05c-lymphoma_deseq.R
 
 
05d_lymphoma_umap.R
05d_lymphoma_umap.R
 
 
05e-gcb_healthy_pca_deseq.R
05e-gcb_healthy_pca_deseq.R
 
 
05f-agirre_gcb_healthy_pca_deseq.R
05f-agirre_gcb_healthy_pca_deseq.R
 
 
05g-gcb_agirre_common_hervs.R
05g-gcb_agirre_common_hervs.R
 
 
05h-agirre_feature_selection.R
05h-agirre_feature_selection.R
 
 
05i-BL_clusters.R
05i-BL_clusters.R
 
 
05j-BL_cluster_feature_selection.R
05j-BL_cluster_feature_selection.R
 
 
05k-BL_cluster_deseq.R
05k-BL_cluster_deseq.R
 
 
05l-all_lymphoma_deseq.R
05l-all_lymphoma_deseq.R
 
 
05m-all_lymphoma_feature_selection.R
05m-all_lymphoma_feature_selection.R
 
 
05n-gcb_v_agirre_gsea.R
05n-gcb_v_agirre_gsea.R
 
 
05o-dlbcl_subtypes.R
05o-dlbcl_subtypes.R
 
 
05p-all_lymphoma_deseq_subtypes.R
05p-all_lymphoma_deseq_subtypes.R
 
 
05q-dlbcl_subtypes_deseq.R
05q-dlbcl_subtypes_deseq.R
 
 
05r-dlbcl_feature_selection.R
05r-dlbcl_feature_selection.R
 
 
06a-lymphoma_classifier_by_cluster.R
06a-lymphoma_classifier_by_cluster.R
 
 
06b-lymphoma_classification_attributes.R
06b-lymphoma_classification_attributes.R
 
 
06c-dlbcl_cluster.retro_survival.R
06c-dlbcl_cluster.retro_survival.R
 
 
06d-dlbcl_cluster.retro_star.R
06d-dlbcl_cluster.retro_star.R
 
 
06e-BL_cluster.retro_stat.R
06e-BL_cluster.retro_stat.R
 
 
07a-htmcp_load_bulk.R
07a-htmcp_load_bulk.R
 
 
07b-htmcp_filter_qc_bulk_data.R
07b-htmcp_filter_qc_bulk_data.R
 
 
07c-htmcp_lymphoma_pca.R
07c-htmcp_lymphoma_pca.R
 
 
LICENSE
LICENSE
 
 
README.md
README.md
 
 
hematological_malignancies_te_analysis.Rproj
hematological_malignancies_te_analysis.Rproj
 
 

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Hematological Malignancies TE Analysis

Quantifying and mapping an atlas of TE expression in hematological malignancies, particularly B-cell lymphomas.

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