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Automated deployment with updated cache 2024-12-26
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3 changes: 3 additions & 0 deletions quay.io/biocontainers/a/allhic:0.9.14--he881be0_0.json
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{
"allhic": "/usr/local/bin/allhic"
}
133 changes: 133 additions & 0 deletions quay.io/biocontainers/a/amplicontyper:0.1.28--pyhdfd78af_0.json
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{
"2to3": "/usr/local/bin/2to3",
"2to3-3.12": "/usr/local/bin/2to3-3.12",
"ace2sam": "/usr/local/bin/ace2sam",
"adig": "/usr/local/bin/adig",
"ahost": "/usr/local/bin/ahost",
"annot-tsv": "/usr/local/bin/annot-tsv",
"bgzip": "/usr/local/bin/bgzip",
"blast2sam.pl": "/usr/local/bin/blast2sam.pl",
"bowtie2sam.pl": "/usr/local/bin/bowtie2sam.pl",
"bunzip2": "/usr/local/bin/bunzip2",
"bzcat": "/usr/local/bin/bzcat",
"bzcmp": "/usr/local/bin/bzcmp",
"bzdiff": "/usr/local/bin/bzdiff",
"bzegrep": "/usr/local/bin/bzegrep",
"bzfgrep": "/usr/local/bin/bzfgrep",
"bzgrep": "/usr/local/bin/bzgrep",
"bzip2": "/usr/local/bin/bzip2",
"bzip2recover": "/usr/local/bin/bzip2recover",
"bzless": "/usr/local/bin/bzless",
"bzmore": "/usr/local/bin/bzmore",
"c_rehash": "/usr/local/bin/c_rehash",
"captoinfo": "/usr/local/bin/captoinfo",
"check_for_update.py": "/usr/local/bin/check_for_update.py",
"classifier_report.py": "/usr/local/bin/classifier_report.py",
"classify": "/usr/local/bin/classify",
"classify.py": "/usr/local/bin/classify.py",
"clear": "/usr/local/bin/clear",
"compile_et": "/usr/local/bin/compile_et",
"curl-config": "/usr/local/bin/curl-config",
"data_classes.py": "/usr/local/bin/data_classes.py",
"export2sam.pl": "/usr/local/bin/export2sam.pl",
"f2py": "/usr/local/bin/f2py",
"fasta-sanitize.pl": "/usr/local/bin/fasta-sanitize.pl",
"genotyper_utilities": "/usr/local/bin/genotyper_utilities",
"genotyper_utilities.py": "/usr/local/bin/genotyper_utilities.py",
"gss-client": "/usr/local/bin/gss-client",
"hierarchy_utils.py": "/usr/local/bin/hierarchy_utils.py",
"html_head.txt": "/usr/local/bin/html_head.txt",
"htsfile": "/usr/local/bin/htsfile",
"idle3": "/usr/local/bin/idle3",
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"infocmp": "/usr/local/bin/infocmp",
"infotocap": "/usr/local/bin/infotocap",
"input_processing.py": "/usr/local/bin/input_processing.py",
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"interpolate_sam.pl": "/usr/local/bin/interpolate_sam.pl",
"k5srvutil": "/usr/local/bin/k5srvutil",
"k8": "/usr/local/bin/k8",
"kadmin": "/usr/local/bin/kadmin",
"kdestroy": "/usr/local/bin/kdestroy",
"keyctl": "/usr/local/bin/keyctl",
"kinit": "/usr/local/bin/kinit",
"klist": "/usr/local/bin/klist",
"kpasswd": "/usr/local/bin/kpasswd",
"krb5-config": "/usr/local/bin/krb5-config",
"ksu": "/usr/local/bin/ksu",
"kswitch": "/usr/local/bin/kswitch",
"ktutil": "/usr/local/bin/ktutil",
"kvno": "/usr/local/bin/kvno",
"libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip",
"libdeflate-gzip": "/usr/local/bin/libdeflate-gzip",
"map.py": "/usr/local/bin/map.py",
"maq2sam-long": "/usr/local/bin/maq2sam-long",
"maq2sam-short": "/usr/local/bin/maq2sam-short",
"md5fa": "/usr/local/bin/md5fa",
"md5sum-lite": "/usr/local/bin/md5sum-lite",
"minimap2": "/usr/local/bin/minimap2",
"model_manager.py": "/usr/local/bin/model_manager.py",
"ncurses6-config": "/usr/local/bin/ncurses6-config",
"ncursesw6-config": "/usr/local/bin/ncursesw6-config",
"nghttp": "/usr/local/bin/nghttp",
"nghttpd": "/usr/local/bin/nghttpd",
"nghttpx": "/usr/local/bin/nghttpx",
"normalizer": "/usr/local/bin/normalizer",
"novo2sam.pl": "/usr/local/bin/novo2sam.pl",
"numpy-config": "/usr/local/bin/numpy-config",
"openssl": "/usr/local/bin/openssl",
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"pip": "/usr/local/bin/pip",
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"python": "/usr/local/bin/python",
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"reporting_classes.py": "/usr/local/bin/reporting_classes.py",
"reset": "/usr/local/bin/reset",
"sam2vcf.pl": "/usr/local/bin/sam2vcf.pl",
"samtools": "/usr/local/bin/samtools",
"samtools.pl": "/usr/local/bin/samtools.pl",
"sclient": "/usr/local/bin/sclient",
"sdust": "/usr/local/bin/sdust",
"seq_cache_populate.pl": "/usr/local/bin/seq_cache_populate.pl",
"sim_client": "/usr/local/bin/sim_client",
"soap2sam.pl": "/usr/local/bin/soap2sam.pl",
"sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer",
"tabix": "/usr/local/bin/tabix",
"tabs": "/usr/local/bin/tabs",
"tclsh": "/usr/local/bin/tclsh",
"tclsh8.6": "/usr/local/bin/tclsh8.6",
"tic": "/usr/local/bin/tic",
"toe": "/usr/local/bin/toe",
"tput": "/usr/local/bin/tput",
"tqdm": "/usr/local/bin/tqdm",
"train": "/usr/local/bin/train",
"train.py": "/usr/local/bin/train.py",
"tset": "/usr/local/bin/tset",
"unzstd": "/usr/local/bin/unzstd",
"uuclient": "/usr/local/bin/uuclient",
"wgsim": "/usr/local/bin/wgsim",
"wgsim_eval.pl": "/usr/local/bin/wgsim_eval.pl",
"wheel": "/usr/local/bin/wheel",
"wish": "/usr/local/bin/wish",
"wish8.6": "/usr/local/bin/wish8.6",
"x86_64-conda-linux-gnu-ld": "/usr/local/bin/x86_64-conda-linux-gnu-ld",
"x86_64-conda-linux-gnu.cfg": "/usr/local/bin/x86_64-conda-linux-gnu.cfg",
"x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld",
"zoom2sam.pl": "/usr/local/bin/zoom2sam.pl",
"zstd": "/usr/local/bin/zstd",
"zstdcat": "/usr/local/bin/zstdcat",
"zstdgrep": "/usr/local/bin/zstdgrep",
"zstdless": "/usr/local/bin/zstdless",
"zstdmt": "/usr/local/bin/zstdmt"
}
225 changes: 225 additions & 0 deletions quay.io/biocontainers/b/bioconductor-bettr:1.2.0--r44hdfd78af_0.json
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{
"R": "/usr/local/bin/R",
"Rscript": "/usr/local/bin/Rscript",
"activate-global-python-argcomplete": "/usr/local/bin/activate-global-python-argcomplete",
"adig": "/usr/local/bin/adig",
"ahost": "/usr/local/bin/ahost",
"bunzip2": "/usr/local/bin/bunzip2",
"bzcat": "/usr/local/bin/bzcat",
"bzcmp": "/usr/local/bin/bzcmp",
"bzdiff": "/usr/local/bin/bzdiff",
"bzegrep": "/usr/local/bin/bzegrep",
"bzfgrep": "/usr/local/bin/bzfgrep",
"bzgrep": "/usr/local/bin/bzgrep",
"bzip2": "/usr/local/bin/bzip2",
"bzip2recover": "/usr/local/bin/bzip2recover",
"bzless": "/usr/local/bin/bzless",
"bzmore": "/usr/local/bin/bzmore",
"c_rehash": "/usr/local/bin/c_rehash",
"cairo-trace": "/usr/local/bin/cairo-trace",
"captoinfo": "/usr/local/bin/captoinfo",
"cjpeg": "/usr/local/bin/cjpeg",
"clear": "/usr/local/bin/clear",
"compile_et": "/usr/local/bin/compile_et",
"curl": "/usr/local/bin/curl",
"curl-config": "/usr/local/bin/curl-config",
"derb": "/usr/local/bin/derb",
"djpeg": "/usr/local/bin/djpeg",
"fax2ps": "/usr/local/bin/fax2ps",
"fax2tiff": "/usr/local/bin/fax2tiff",
"fc-cache": "/usr/local/bin/fc-cache",
"fc-cat": "/usr/local/bin/fc-cat",
"fc-conflist": "/usr/local/bin/fc-conflist",
"fc-list": "/usr/local/bin/fc-list",
"fc-match": "/usr/local/bin/fc-match",
"fc-pattern": "/usr/local/bin/fc-pattern",
"fc-query": "/usr/local/bin/fc-query",
"fc-scan": "/usr/local/bin/fc-scan",
"fc-validate": "/usr/local/bin/fc-validate",
"freetype-config": "/usr/local/bin/freetype-config",
"fribidi": "/usr/local/bin/fribidi",
"genbrk": "/usr/local/bin/genbrk",
"gencfu": "/usr/local/bin/gencfu",
"gencnval": "/usr/local/bin/gencnval",
"gendict": "/usr/local/bin/gendict",
"genrb": "/usr/local/bin/genrb",
"gsl-config": "/usr/local/bin/gsl-config",
"gsl-histogram": "/usr/local/bin/gsl-histogram",
"gsl-randist": "/usr/local/bin/gsl-randist",
"gss-client": "/usr/local/bin/gss-client",
"hb-info": "/usr/local/bin/hb-info",
"hb-ot-shape-closure": "/usr/local/bin/hb-ot-shape-closure",
"hb-shape": "/usr/local/bin/hb-shape",
"hb-subset": "/usr/local/bin/hb-subset",
"hb-view": "/usr/local/bin/hb-view",
"icu-config": "/usr/local/bin/icu-config",
"icuexportdata": "/usr/local/bin/icuexportdata",
"icuinfo": "/usr/local/bin/icuinfo",
"idle3": "/usr/local/bin/idle3",
"idle3.13": "/usr/local/bin/idle3.13",
"infocmp": "/usr/local/bin/infocmp",
"infotocap": "/usr/local/bin/infotocap",
"installBiocDataPackage.sh": "/usr/local/bin/installBiocDataPackage.sh",
"jpegtran": "/usr/local/bin/jpegtran",
"jq": "/usr/local/bin/jq",
"k5srvutil": "/usr/local/bin/k5srvutil",
"kadmin": "/usr/local/bin/kadmin",
"kdestroy": "/usr/local/bin/kdestroy",
"keyctl": "/usr/local/bin/keyctl",
"kinit": "/usr/local/bin/kinit",
"klist": "/usr/local/bin/klist",
"kpasswd": "/usr/local/bin/kpasswd",
"krb5-config": "/usr/local/bin/krb5-config",
"ksu": "/usr/local/bin/ksu",
"kswitch": "/usr/local/bin/kswitch",
"ktutil": "/usr/local/bin/ktutil",
"kvno": "/usr/local/bin/kvno",
"libdeflate-gunzip": "/usr/local/bin/libdeflate-gunzip",
"libdeflate-gzip": "/usr/local/bin/libdeflate-gzip",
"libpng-config": "/usr/local/bin/libpng-config",
"libpng16-config": "/usr/local/bin/libpng16-config",
"make": "/usr/local/bin/make",
"makeconv": "/usr/local/bin/makeconv",
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"ncursesw6-config": "/usr/local/bin/ncursesw6-config",
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"openssl": "/usr/local/bin/openssl",
"pal2rgb": "/usr/local/bin/pal2rgb",
"pandoc": "/usr/local/bin/pandoc",
"pandoc-lua": "/usr/local/bin/pandoc-lua",
"pandoc-server": "/usr/local/bin/pandoc-server",
"pango-list": "/usr/local/bin/pango-list",
"pango-segmentation": "/usr/local/bin/pango-segmentation",
"pango-view": "/usr/local/bin/pango-view",
"pcre2-config": "/usr/local/bin/pcre2-config",
"pcre2grep": "/usr/local/bin/pcre2grep",
"pcre2test": "/usr/local/bin/pcre2test",
"pip": "/usr/local/bin/pip",
"pip3": "/usr/local/bin/pip3",
"pkgdata": "/usr/local/bin/pkgdata",
"png-fix-itxt": "/usr/local/bin/png-fix-itxt",
"pngfix": "/usr/local/bin/pngfix",
"ppm2tiff": "/usr/local/bin/ppm2tiff",
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"python": "/usr/local/bin/python",
"python-argcomplete-check-easy-install-script": "/usr/local/bin/python-argcomplete-check-easy-install-script",
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"raw2tiff": "/usr/local/bin/raw2tiff",
"rdjpgcom": "/usr/local/bin/rdjpgcom",
"register-python-argcomplete": "/usr/local/bin/register-python-argcomplete",
"reset": "/usr/local/bin/reset",
"sclient": "/usr/local/bin/sclient",
"sed": "/usr/local/bin/sed",
"sim_client": "/usr/local/bin/sim_client",
"sqlite3_analyzer": "/usr/local/bin/sqlite3_analyzer",
"tabs": "/usr/local/bin/tabs",
"tclsh": "/usr/local/bin/tclsh",
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"tiff2bw": "/usr/local/bin/tiff2bw",
"tiff2pdf": "/usr/local/bin/tiff2pdf",
"tiff2ps": "/usr/local/bin/tiff2ps",
"tiff2rgba": "/usr/local/bin/tiff2rgba",
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"tiffcp": "/usr/local/bin/tiffcp",
"tiffcrop": "/usr/local/bin/tiffcrop",
"tiffdither": "/usr/local/bin/tiffdither",
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"tiffmedian": "/usr/local/bin/tiffmedian",
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"tjbench": "/usr/local/bin/tjbench",
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"tomlq": "/usr/local/bin/tomlq",
"tput": "/usr/local/bin/tput",
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"unzstd": "/usr/local/bin/unzstd",
"uuclient": "/usr/local/bin/uuclient",
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"x86_64-conda-linux-gnu-c++": "/usr/local/bin/x86_64-conda-linux-gnu-c++",
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"x86_64-conda-linux-gnu-gcov": "/usr/local/bin/x86_64-conda-linux-gnu-gcov",
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"x86_64-conda_cos6-linux-gnu-dwp": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-dwp",
"x86_64-conda_cos6-linux-gnu-elfedit": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-elfedit",
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"x86_64-conda_cos6-linux-gnu-gfortran": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gfortran",
"x86_64-conda_cos6-linux-gnu-gprof": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-gprof",
"x86_64-conda_cos6-linux-gnu-ld": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld",
"x86_64-conda_cos6-linux-gnu-ld.bfd": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.bfd",
"x86_64-conda_cos6-linux-gnu-ld.gold": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ld.gold",
"x86_64-conda_cos6-linux-gnu-nm": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-nm",
"x86_64-conda_cos6-linux-gnu-objcopy": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objcopy",
"x86_64-conda_cos6-linux-gnu-objdump": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-objdump",
"x86_64-conda_cos6-linux-gnu-ranlib": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-ranlib",
"x86_64-conda_cos6-linux-gnu-readelf": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-readelf",
"x86_64-conda_cos6-linux-gnu-size": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-size",
"x86_64-conda_cos6-linux-gnu-strings": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strings",
"x86_64-conda_cos6-linux-gnu-strip": "/usr/local/bin/x86_64-conda_cos6-linux-gnu-strip",
"xq": "/usr/local/bin/xq",
"yq": "/usr/local/bin/yq",
"zstd": "/usr/local/bin/zstd",
"zstdcat": "/usr/local/bin/zstdcat",
"zstdgrep": "/usr/local/bin/zstdgrep",
"zstdless": "/usr/local/bin/zstdless",
"zstdmt": "/usr/local/bin/zstdmt"
}
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