Introduction: Welcome to the SoyPopGeneticsPipeline repository! This collection houses a comprehensive variant calling pipeline and population genetics code specifically designed for soybean analysis. Whether you are involved in soybean research or exploring genetic diversity in plant populations, this repository provides a robust set of tools and scripts to streamline your analysis.
Overview:
Variant Calling Pipeline: A step-by-step pipeline for calling variants in soybean genomes, leveraging industry-standard tools like GATK and samtools. The pipeline is optimized for accuracy and efficiency, ensuring reliable results in diverse soybean datasets.
Population Genetics Analysis: Explore genetic diversity and population dynamics in soybeans using our dedicated analysis code. Uncover insights into allele frequencies, population structure, and more, tailored to the unique characteristics of soybean genetics.