v3.1.0

The correct files to download are either abismal-3.1.0.zip or abismal-3.1.0.tar.gz
Please do not download the "Source code" files automatically generated by github, as they do not contain all files necessary for compilation

This release contains minor optimizations and bug fixes as described below

• abismal was behaving unexpectedly if, by mistake, paired-end read files did not contain the same number of reads. Now it will report an error informing the user should that be the case.
• fixed a couple of cases where reads could be reporting in inconsistent CIGAR lengths.
• if run using verbose (-v), abismal reports the number of threads used, and warns the user if the number of threads requested is more than the number of cores available in the machine.
• some minor optimizations to the banded Smith-Waterman algorithm should make this version run about 5% faster than 3.0.0