Search #142
Workflow file for this run
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| name: Continuous Integration | |
| on: | |
| pull_request: | |
| branches: [main] | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| python-version: ["3.11", "3.12"] | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install sg | |
| run: python3 -m pip install -e .[ci] | |
| - name: Install hmmer | |
| run: sudo apt-get install hmmer | |
| - name: Run tests | |
| run: pytest tests -v --cov=./socialgene --cov-report=xml:./coverage.xml --cov-report term-missing | |
| - name: Upload Coverage to Codecov | |
| uses: codecov/codecov-action@v2 |