Skip to content

Changes protein hashing #112

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
merged 10 commits into from
Oct 20, 2024
Merged

Changes protein hashing #112

merged 10 commits into from
Oct 20, 2024

Conversation

chasemc
Copy link
Contributor

@chasemc chasemc commented Oct 20, 2024

The hashing algorithms now ignore '*' of any length that start or end a protein sequence

currently only the GFF files from MGnify are supported
Was only saving the last locus due to loop
removes * from beginning or end of sequence  before hashing
ensures there is whitespace in a sequence
Copy link

codecov bot commented Oct 20, 2024

Codecov Report

Attention: Patch coverage is 83.33333% with 1 line in your changes missing coverage. Please review.

Project coverage is 45.11%. Comparing base (7d7e8d3) to head (0e7c450).
Report is 31 commits behind head on main.

Files with missing lines Patch % Lines
socialgene/parsers/gff.py 66.66% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##             main     #112      +/-   ##
==========================================
- Coverage   47.23%   45.11%   -2.12%     
==========================================
  Files          72       86      +14     
  Lines        3874     5603    +1729     
==========================================
+ Hits         1830     2528     +698     
- Misses       2044     3075    +1031     

☔ View full report in Codecov by Sentry.
📢 Have feedback on the report? Share it here.

@chasemc chasemc merged commit 1981e3a into main Oct 20, 2024
4 checks passed
@chasemc chasemc deleted the gff branch October 20, 2024 13:26
@github-actions github-actions bot locked and limited conversation to collaborators Oct 20, 2024
Sign up for free to subscribe to this conversation on GitHub. Already have an account? Sign in.
Labels
None yet
Projects
None yet
Development

Successfully merging this pull request may close these issues.

1 participant