Code

store pca scores results#5265

Code

Open

isaak wants to merge 58 commits intomastersolgenomics/sgn:masterfrom topic/solgs/store-pca-resultssolgenomics/sgn:topic/solgs/store-pca-resultsCopy head branch name to clipboard

+18,885-8,938

Commits

Commits on Nov 12, 2024

• add save pcs btn

  isaak

  committed
  bdbff75

  Copy full SHA for bdbff75

Commits on Nov 18, 2024

• Merge branch 'master' into topic/solgs/store-pca-results

  isaak

  committed
  dc4ba1d

  Copy full SHA for dc4ba1d

Commits on Nov 22, 2024

• save pca scores

  isaak

  committed
  5125aa5

  Copy full SHA for 5125aa5

• make analysis save methods generic

  isaak

  committed
  7e7554c

  Copy full SHA for 7e7554c

Commits on Nov 29, 2024

• reuse analysisSave methods

  isaak

  committed
  f42a5f6

  Copy full SHA for f42a5f6

• use solGS.save.storeAnalysisResults

  isaak

  committed
  09fa87c

  Copy full SHA for 09fa87c

• load analysisSave js lib

  isaak

  committed
  765d663

  Copy full SHA for 765d663

• add include_rownames param

  isaak

  committed
  18388c6

  Copy full SHA for 18388c6

Commits on Dec 2, 2024

• refactor pca analysis args structuring and parsing

  isaak

  committed
  43674d8

  Copy full SHA for 43674d8

• move gebvs saving code into gebvsSave.js

  isaak

  committed
  25ce791

  Copy full SHA for 25ce791

Commits on Dec 3, 2024

• use getPcaAnalysisArgs method

  isaak

  committed
  48bc51f

  Copy full SHA for 48bc51f

Commits on Dec 9, 2024

• add functions for getting breeding prog id

  isaak

  committed
  c797ff0

  Copy full SHA for c797ff0

• add get_trial_id_by_accession

  isaak

  committed
  9295872

  Copy full SHA for 9295872

• tweak pca args structuring

  isaak

  committed
  89898cc

  Copy full SHA for 89898cc

• clean up

  isaak

  committed
  3ad03c3

  Copy full SHA for 3ad03c3

Commits on Dec 13, 2024

• save top 10 principal components

  isaak

  committed
  516cab4

  Copy full SHA for 516cab4

• add PCA score terms

  isaak

  committed
  a579819

  Copy full SHA for a579819

• fix style

  isaak

  committed
  ef3ee1d

  Copy full SHA for ef3ee1d

• add prcomp protocol type

  isaak

  committed
  2efd1ba

  Copy full SHA for 2efd1ba

• import gebvsSave js

  isaak

  committed
  a36b3b4

  Copy full SHA for a36b3b4

• add prcomp protocol_type entry

  isaak

  committed
  74b176f

  Copy full SHA for 74b176f

• pca result save controller

  isaak

  committed
  65f97aa

  Copy full SHA for 65f97aa

• gbvs save controller

  isaak

  committed
  ff17fbb

  Copy full SHA for ff17fbb

• clean up modules, fix indentations

  isaak

  committed
  df58e67

  Copy full SHA for df58e67

• add pca results detail ajax req

  isaak

  committed
  4889372

  Copy full SHA for 4889372

• update get analysis results method names

  isaak

  committed
  0ca8334

  Copy full SHA for 0ca8334

• move gebvs save logic to gebvsSave controller

  isaak

  committed
  3efada4

  Copy full SHA for 3efada4

Commits on Dec 16, 2024

• tweak convert_arrayref_to_hashref fun to make it wrok with multi traits in a file

  isaak

  committed
  dd5210e

  Copy full SHA for dd5210e

• update div elem names

  isaak

  committed
  e613889

  Copy full SHA for e613889

Commits on Dec 17, 2024

• make selenium tests work with private lists

  isaak

  committed
  f42e009

  Copy full SHA for f42e009

• update fixture dump with db patches and cxgn_statistics.obo (PCA) terms

  isaak

  committed
  7d2f3ff

  Copy full SHA for 7d2f3ff

Commits on Dec 18, 2024

• tweak pca args parsing

  isaak

  committed
  fb0954d

  Copy full SHA for fb0954d

• make pcs saving work for different data types from trial detail page

  isaak

  committed
  19ea1cf

  Copy full SHA for 19ea1cf

• add analysis_page to args

  isaak

  committed
  c6348a6

  Copy full SHA for c6348a6

• organize code

  isaak

  committed
  3aaebc4

  Copy full SHA for 3aaebc4

Commits on Dec 19, 2024

• delete double variable_of cvterm in fixture

  isaak

  committed
  3208d9e

  Copy full SHA for 3208d9e

Commits on Dec 23, 2024

• update parsing list or dataset ids

  isaak

  committed
  8ea228c

  Copy full SHA for 8ea228c

• clean up redundant code for pca and clustering file id

  isaak

  committed
  5e5c492

  Copy full SHA for 5e5c492

Commits on Dec 24, 2024

• remove selection pop id...

  isaak

  committed
  624b89a

  Copy full SHA for 624b89a

• make loading pca result from selection predition page load in standalone pca page work

  isaak

  committed
  6fc027f

  Copy full SHA for 6fc027f

• ad pca resuls saving selenium tests

  isaak

  committed
  e358bfa

  Copy full SHA for e358bfa

Commits on Dec 31, 2024

• show save pcs on analysis with submitted job names only

  isaak

  committed
  5c3bb7e

  Copy full SHA for 5c3bb7e

Commits on Jan 2, 2025

• fix conflict and merge master

  isaak

  committed
  9329d8e

  Copy full SHA for 9329d8e

• fix logged analysis name check and pass selenium tests

  isaak

  committed
  bcc68c5

  Copy full SHA for bcc68c5

Commits on Jan 6, 2025

• update expected recordsTotal and recordsFiltered and pass unit_mech/AJAX/Search/Trait.t test

  isaak

  committed
  5ef4147

  Copy full SHA for 5ef4147

Commits on Jan 8, 2025

• update BrAPI_v1 mech tests to reflect changes to new cvterm entries in fixture db

  isaak

  committed
  fe4163c

  Copy full SHA for fe4163c

• update BrAPIV2 phenotying mech test to reflect new cvterm entries in the fixture db

  isaak

  committed
  7a259a9

  Copy full SHA for 7a259a9

• fix lint test failures

  isaak

  committed
  d264b95

  Copy full SHA for d264b95

Commits on Jan 13, 2025

• Merge branch 'master' into topic/solgs/store-pca-results

  isaak

  committed
  9506d26

  Copy full SHA for 9506d26

Commits on Jan 20, 2025

• limit loading pca results to once, regardless of how many times a user clicks run pca btn

  isaak

  committed
  7e74097

  Copy full SHA for 7e74097

Commits on Jan 27, 2025

• retrieve the latest analysis job details

  isaak

  committed
  ee1cdb3

  Copy full SHA for ee1cdb3

• apply Prettier formatting

  isaak

  committed
  364b59b

  Copy full SHA for 364b59b

• apply formatting

  isaak

  committed
  a870075

  Copy full SHA for a870075

Commits on Feb 3, 2025

• show Run PCA again, if data type changes

  isaak

  committed
  d887c3d

  Copy full SHA for d887c3d

• apply Prettier formatting

  isaak

  committed
  2a563b8

  Copy full SHA for 2a563b8

• undo Prettier formatting

  isaak

  committed
  2a4c13f

  Copy full SHA for 2a4c13f

• strip string chars from dataset and list ids

  isaak

  committed
  c34f811

  Copy full SHA for c34f811

Commits on Feb 4, 2025

• add _trial__ to germplasm suffix

  isaak

  committed
  63406d0

  Copy full SHA for 63406d0