A small Python library for convenient post analysis of SLEAP* results. TadPose was developed with the Sweeney lab at ISTA (Austria). To use tadpose the original movie and SLEAP .h5 analysis file is required
- Alignment of animals into ego-centric views
- Convenient access of original and aligned body-part locations
- Image warping into ego-centric views
- Smoothing spline interpolation of body-part sequences
- Feature computations such as speed, acceleration and angles
- Export of body-parts locations as .csv
To install the latest version from repositories master branch
pip install git+https://github.com/sommerc/tadpose.git
This requires git to be installed.
Download a SLEAP predicted demo movie and unzip.
And follow steps in example notebook