Update ubibrowser test

sorgerlab · Sep 27, 2023 · ef8c4a6 · ef8c4a6
1 parent f6e8ec9
commit ef8c4a6
Showing 1 changed file with 9 additions and 7 deletions.
diff --git a/indra/tests/test_sources/test_ubibrowser.py b/indra/tests/test_sources/test_ubibrowser.py
@@ -13,14 +13,15 @@
 def test_extract_statements():
     up = ubibrowser.process_file(e3_file, dub_file)
     assert len(up.statements) == 9
-    assert isinstance(up.statements[0], Ubiquitination)
+    assert isinstance(up.statements[2], Ubiquitination)
     assert isinstance(up.statements[-1], Deubiquitination)
 
     assert_valid_statements(up.statements)
 
-    #1	AMFR2_HUMAN	A1AT_HUMAN	Q9UKV5	P01009	AMFR	SERPINA1
-    # MEDLINE	16979136	Here we report that ...	RING	3	E3	H.sapiens
-    e3_stmt = up.statements[0]
+    #198	AMFR2_HUMAN	A1AT_HUMAN	Q9UKV5	P01009	AMFR	SERPINA1
+    # MEDLINE	16979136	"Here we report that ..."	RING	1
+    # "Training data"	H.sapiens
+    e3_stmt = up.statements[2]
     assert e3_stmt.enz.name == 'AMFR'
     assert e3_stmt.enz.db_refs['UP'] == 'Q9UKV5'
     assert e3_stmt.sub.name == 'SERPINA1'
@@ -30,9 +31,10 @@ def test_extract_statements():
     assert e3_stmt.evidence[0].pmid == '16979136'
     assert e3_stmt.evidence[0].text.startswith('Here we report that')
 
-    # 677	UBP33_HUMAN	ARRB1_HUMAN	Q8TEY7	P49407	USP33	ARRB1
-    # MEDLINE	19363159	We now report the discovery that...	USP	1	DUB	H.sapiens
-    dub_stmt = up.statements[-1]
+    # 56	UBP33_HUMAN	ARRB1_HUMAN	Q8TEY7	P49407	USP33	ARRB1	MEDLINE
+    # 19363159	"We now report the discovery that "	"USP	1"	"Training data"
+    # H.sapiens
+    dub_stmt = up.statements[5]
     assert dub_stmt.enz.name == 'USP33'
     assert dub_stmt.enz.db_refs['UP'] == 'Q8TEY7'
     assert dub_stmt.sub.name == 'ARRB1'