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Issues: sourmash-bio/sourmash_plugin_branchwater

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108 Open 142 Closed
108 Open 142 Closed
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Issues list

output file format - adding choice of fields?
#652 opened Jun 6, 2025 by CatarinaCarolina
1
combining fastgather and gather command didn't report de novo genomes coming from itself.
#647 opened May 12, 2025 by yuzie0314
5
ksize discrepancies between cmdline args and output file?
#645 opened Apr 30, 2025 by CatarinaCarolina
2
fastgather does not create empty files?
#644 opened Apr 28, 2025 by ccbaumler
enable --singleton for singlesketch
#642 opened Apr 22, 2025 by bluegenes
ParseError { msg: "corrupt deflate stream", kind: Io, position: ErrorPosition { line: 0, id: None }, format: None }
#640 opened Apr 21, 2025 by jorondo1
Add pre-computation of TF-IDF for multisearch
#637 opened Apr 8, 2025 by olgabot
manysearch_rocksdb converts threshold: f64 to minimum_containment: usize - is this right?
#608 opened Feb 24, 2025 by ctb
errors/warnings with manysearch --output-all-comparisons
#607 opened Feb 21, 2025 by bettafische
manysearch manifest not working, but index does
#606 opened Feb 20, 2025 by bettafische
2
explore paraseq for FASTQ reading
#604 opened Feb 17, 2025 by ctb
branchwater does not terminate properly on Ctrl+C
#602 opened Feb 9, 2025 by apcamargo
3
user support information for the branchwater plugin to sourmash!
#592 opened Jan 15, 2025 by ctb
branchwater is under the AGPL, sourmash is under the BSD 3-Clause. What does this mean? fyi
#591 opened Jan 15, 2025 by ctb
consider adding Developer Certificate of Origin to PRs
#590 opened Jan 14, 2025 by ctb
weird slow start to manysketch
#586 opened Jan 12, 2025 by ctb
1
improve errors/warnings for large searches
#585 opened Jan 12, 2025 by ctb
disable > 1 CPU (or complain) on fastmultigather x rocksdb
#582 opened Jan 11, 2025 by ctb
1
add binary wheels, maybe
#578 opened Jan 8, 2025 by ctb
1
rocksdb search functions don't check ksize or moltype, I think
#566 opened Jan 3, 2025 by ctb
building revindex databases at scaled 10_000 is fast & (reasonably) low memory!
#564 opened Jan 2, 2025 by ctb
1
maturin now requires version in pyproject.toml
#560 opened Dec 29, 2024 by bluegenes
2
update conda-forge feedstock recipe
#554 opened Dec 21, 2024 by ctb
consider adding some Rust tests
#551 opened Dec 21, 2024 by ctb
1
add documentation for skipmers
#549 opened Dec 20, 2024 by bluegenes
1
ProTip! no:milestone will show everything without a milestone.