v0.4.0

This release introduces two new parameters:

• --checksum-failures - an output file to log any failures with the checksum file download and parsing or any md5sum mismatches. Required for gbsketch
• --batch-size - enables writing smaller, batched zipfiles. This is recommended for large database generation, as batches allow restart after unexpected failure. It also should address some issues arising from extremely large zips.

Under the hood, this release also introduces a standardized sketching building framework that may be useful outside of this plugin.

What's Changed

• MRG: report checksum file download failures by @bluegenes in #92
• MRG: add generic support for signature building by @bluegenes in #101
• MRG: improve restart by optionally writing batched zipfiles by @bluegenes in #102
• MRG: fix ci by moving install from mambaforge --> miniforge by @bluegenes in #106
• bump to v0.4.0 by @bluegenes in #109

Dependabot

• sourmash-core:
  • Bump sourmash from 0.14.0 to 0.14.1 by @dependabot in #62
  • Bump sourmash from 0.14.1 to 0.15.0 by @dependabot in #75
  • Bump sourmash from 0.15.0 to 0.15.1 by @dependabot in #87
  • Bump sourmash from 0.15.1 to 0.15.2 by @dependabot in #103
• simple-error:
  • Bump simple-error from 0.3.0 to 0.3.1 by @dependabot in #59
• reqwest:
  • Bump reqwest from 0.12.4 to 0.12.5 by @dependabot in #60
  • Bump reqwest from 0.12.5 to 0.12.7 by @dependabot in #88
• lazy_static:
  • Bump lazy_static from 1.4.0 to 1.5.0 by @dependabot in #61
• pyo3:
  • Bump pyo3 from 0.21.2 to 0.22.0 by @dependabot in #64
  • Bump pyo3 from 0.22.0 to 0.22.1 by @dependabot in #66
  • Bump pyo3 from 0.22.1 to 0.22.2 by @dependabot in #73
  • Bump pyo3 from 0.22.2 to 0.22.3 by @dependabot in #99
• serde_json:
  • Bump serde_json from 1.0.117 to 1.0.119 by @dependabot in #63
  • Bump serde_json from 1.0.119 to 1.0.120 by @dependabot in #67
• serde:
  • Bump serde from 1.0.203 to 1.0.204 by @dependabot in #65
• tokio:
  • Bump tokio from 1.38.0 to 1.38.1 by @dependabot in #74
  • Bump tokio from 1.38.1 to 1.40.0 by @dependabot in #91
• pytest:
  • Update pytest requirement from <8.3.0,>=6.2.4 to >=6.2.4,<8.4.0 by @dependabot in #71
• openssl:
  • Bump openssl from 0.10.64 to 0.10.66 by @dependabot in #72
• regex:
  • Bump regex from 1.10.5 to 1.10.6 by @dependabot in #80
  • Bump regex from 1.10.6 to 1.11.0 by @dependabot in #104
• anyhow:
  • Bump anyhow from 1.0.86 to 1.0.89 by @dependabot in #100

Full Changelog: v0.3.2...v0.4.0