Merge branch 'main' into scikit-image_ellipses

.github/CODEOWNERS

@@ -0,0 +1,3 @@
+# automatically requests pull request reviews for files matching the given pattern; the last match takes precedence
+
+*       @spacetelescope/stcal-maintainers

.github/labeler.yml

@@ -1,46 +1,46 @@
 documentation:
-  - 'docs/**/*'
-  - any: [ '*.rst', '!CHANGES.rst' ]
-  - '*.md'
-  - '.readthedocs.yaml'
-  - 'LICENSE'
+  - "docs/**/*"
+  - any: ["*.rst", "!CHANGES.rst"]
+  - "*.md"
+  - ".readthedocs.yaml"
+  - "LICENSE"
 
 installation:
-  - 'pyproject.toml'
-  - 'setup.*'
-  - 'requirements-*.txt'
-  - 'MANIFEST.in'
+  - "pyproject.toml"
+  - "setup.*"
+  - "requirements-*.txt"
+  - "MANIFEST.in"
 
 # --------------------------------------- testing ---------------------------------------
 
 automation:
-  - '.github/**'
-  - '.bandit.yaml'
-  - '.codecov.yml'
+  - ".github/**"
+  - ".bandit.yaml"
+  - ".codecov.yml"
 
 testing:
-  - '**/tests/**'
-  - '.github/workflows/ci*.yml'
-  - 'conftest.py'
+  - "**/tests/**"
+  - ".github/workflows/ci*.yml"
+  - "conftest.py"
 
 # --------------------------------------- modules ---------------------------------------
 
 dark_current:
-  - '**/*dark_current*'
-  - '**/*dark_current*/**'
+  - "**/*dark_current*"
+  - "**/*dark_current*/**"
 
 jump:
-  - '**/*jump*'
-  - '**/*jump*/**'
+  - "**/*jump*"
+  - "**/*jump*/**"
 
 linearity:
-  - '**/*linearity*'
-  - '**/*linearity*/**'
+  - "**/*linearity*"
+  - "**/*linearity*/**"
 
 ramp_fitting:
-  - '**/*ramp_fitting*'
-  - '**/*ramp_fitting*/**'
+  - "**/*ramp_fitting*"
+  - "**/*ramp_fitting*/**"
 
 saturation:
-  - '**/*saturation*'
-  - '**/*saturation*/**'
+  - "**/*saturation*"
+  - "**/*saturation*/**"

.github/pull_request_template.md

@@ -1,15 +1,19 @@
-<!-- If this PR closes a JIRA ticket, make sure the title starts with the JIRA issue number, 
+<!-- If this PR closes a JIRA ticket, make sure the title starts with the JIRA issue number,
 for example JP-1234: <Fix a bug> -->
+
 Resolves [JP-nnnn](https://jira.stsci.edu/browse/JP-nnnn)
 Resolves [RCAL-nnnn](https://jira.stsci.edu/browse/RCAL-nnnn)
 
 <!-- If this PR closes a GitHub issue, reference it here by its number -->
+
 Closes #
 
 <!-- describe the changes comprising this PR here -->
+
 This PR addresses ...
 
 **Checklist**
+
 - [ ] added entry in `CHANGES.rst` (either in `Bug Fixes` or `Changes to API`)
 - [ ] updated relevant tests
 - [ ] updated relevant documentation

.github/workflows/build.yml

@@ -0,0 +1,27 @@
+name: build
+
+on:
+  release:
+    types: [released]
+  pull_request:
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  build:
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/publish.yml@v1
+    with:
+      upload_to_pypi: ${{ (github.event_name == 'release') && (github.event.action == 'released') }}
+      targets: |
+        # Linux wheels
+        - cp3*-manylinux_x86_64
+        # MacOS wheels
+        - cp3*-macosx_x86_64
+        # Until we have arm64 runners, we can't automatically test arm64 wheels
+        - cp3*-macosx_arm64
+      sdist: true
+    secrets:
+      pypi_token: ${{ secrets.PYPI_PASSWORD_STSCI_MAINTAINER }}

.github/workflows/changelog.yml

@@ -4,13 +4,21 @@ on:
   pull_request:
     types: [labeled, unlabeled, opened, synchronize, reopened]
 
+# Only cancel in-progress jobs or runs for the current workflow
+#   This cancels the already triggered workflows for a specific PR without canceling
+#   other instances of this workflow (other PRs, scheduled triggers, etc) when something
+#   within that PR re-triggers this CI
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
 jobs:
   ensure_changelog:
     name: Verify that a changelog entry exists for this pull request
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-        with:
-          submodules: true
-      - run: grep -P '\[[^\]]*#${{github.event.number}}[,\]]' CHANGES.rst
-        if: ${{ !contains(github.event.pull_request.labels.*.name, 'no-changelog-entry-needed') }}
+    - uses: scientific-python/action-check-changelogfile@0.2
+      env:
+        CHANGELOG_FILENAME: CHANGES.rst
+        CHECK_MILESTONE: false
+        GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/ci.yml

@@ -1,97 +1,46 @@
-name: CI
+name: test
 
 on:
   push:
     branches:
       - main
-      - '*x'
+      - "*x"
     tags:
-      - '*'
+      - "*"
   pull_request:
-    branches:
-      - main
   schedule:
     # Weekly Monday 9AM build
-    - cron: "0 9 * * 1"
+    # * is a special character in YAML so you have to quote this string
+    - cron: '0 9 * * 1'
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
 
 jobs:
   check:
-    name: ${{ matrix.toxenv }}
-    runs-on: ${{ matrix.os }}
-    strategy:
-      fail-fast: false
-      matrix:
-        toxenv: [ check-style, check-security, check-build ]
-        python-version: [ '3.x' ]
-        os: [ ubuntu-latest ]
-    steps:
-      - uses: actions/checkout@v3
-        with:
-          fetch-depth: 0
-      - uses: actions/setup-python@v4
-        with:
-          python-version: ${{ matrix.python-version }}
-          cache: 'pip'
-          cache-dependency-path: pyproject.toml
-      - run: pip install tox
-      - run: tox -e ${{ matrix.toxenv }}
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
+    with:
+      envs: |
+        - linux: check-style
+        - linux: check-build
   test:
-    name: ${{ matrix.toxenv }} (Python ${{ matrix.python-version }}, ${{ matrix.os }})
-    needs: [ check ]
-    runs-on: ${{ matrix.os }}
-    strategy:
-      fail-fast: false
-      matrix:
-        toxenv: [ test-xdist ]
-        python-version: [ '3.8', '3.9', '3.10', '3.11' ]
-        os: [ ubuntu-latest, macos-latest ]
-        include:
-          - toxenv: test-cov
-            os: ubuntu-latest
-            python-version: '3.11'
-          - toxenv: test-numpy122
-            os: ubuntu-latest
-            python-version: '3.10'
-          - toxenv: test-numpy121
-            os: ubuntu-latest
-            python-version: '3.10'
-          - toxenv: test-numpy122
-            os: ubuntu-latest
-            python-version: '3.9'
-          - toxenv: test-numpy121
-            os: ubuntu-latest
-            python-version: '3.9'
-          - toxenv: test-numpy120
-            os: ubuntu-latest
-            python-version: '3.9'
-          - toxenv: test-numpy122
-            os: ubuntu-latest
-            python-version: '3.8'
-          - toxenv: test-numpy121
-            os: ubuntu-latest
-            python-version: '3.8'
-          - toxenv: test-numpy120
-            os: ubuntu-latest
-            python-version: '3.8'
-          - toxenv: test-jwst-xdist-cov
-            os: ubuntu-latest
-            python-version: '3.x'
-          - toxenv: test-romancal-xdist-cov
-            os: ubuntu-latest
-            python-version: '3.x'
-    steps:
-      - uses: actions/checkout@v3
-        with:
-          fetch-depth: 0
-      - uses: actions/setup-python@v4
-        with:
-          python-version: ${{ matrix.python-version }}
-      - run: pip install tox
-      - run: tox -e ${{ matrix.toxenv }}
-      - if: ${{ contains(matrix.toxenv,'-cov') }}
-        uses: codecov/codecov-action@v3
-        with:
-          file: ./coverage.xml
-          flags: unit
-          fail_ci_if_error: true
-          token: ${{ secrets.CODECOV_TOKEN }}
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
+    with:
+      envs: |
+        - linux: py310-oldestdeps-cov-xdist
+        - linux: py310-xdist
+        - linux: py311-xdist
+        - linux: py312-cov-xdist
+          coverage: codecov
+        - macos: py311-xdist
+  test_downstream:
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
+    with:
+      setenv: |
+        CRDS_PATH: /tmp/data/crds_cache
+        CRDS_CLIENT_RETRY_COUNT: 3
+        CRDS_CLIENT_RETRY_DELAY_SECONDS: 20
+      envs: |
+        - linux: py311-jwst-cov-xdist
+        - linux: py311-romancal-cov-xdist

.github/workflows/ci_cron.yml

@@ -0,0 +1,20 @@
+name: test on schedule
+
+on:
+  schedule:
+    # Weekly Monday midnight build
+    - cron: "0 0 * * 1"
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    if: (github.repository == 'spacetelescope/stcal' && (github.event_name == 'schedule' || github.event_name == 'push' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'run scheduled tests')))
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
+    with:
+      envs: |
+        - macos: py310-xdist
+        - macos: py311-xdist

.github/workflows/label_pull_request.yml

@@ -13,4 +13,4 @@ jobs:
       - uses: actions/labeler@v4
         if: github.event_name == 'pull_request_target' || github.event_name == 'pull_request'
         with:
-          repo-token: "${{ secrets.GITHUB_TOKEN }}"
+          repo-token: "${{ secrets.GITHUB_TOKEN }}"

.github/workflows/tests_devdeps.yml

@@ -0,0 +1,42 @@
+name: test with development versions
+
+on:
+  push:
+    branches:
+      - main
+      - '*x'
+    tags:
+      - '*'
+  pull_request:
+  schedule:
+    # Weekly Monday 9AM build
+    # * is a special character in YAML so you have to quote this string
+    - cron: '0 9 * * 1'
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  test:
+    if: (github.repository == 'spacetelescope/stcal' && (github.event_name == 'schedule' || github.event_name == 'push' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'run devdeps tests')))
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
+    with:
+      envs: |
+        - linux: py310-devdeps-xdist
+        - linux: py311-devdeps-xdist
+        - linux: py312-devdeps-xdist
+        - linux: py3-devdeps-xdist
+  test_downstream:
+    if: (github.repository == 'spacetelescope/stcal' && (github.event_name == 'schedule' || github.event_name == 'push' || github.event_name == 'workflow_dispatch' || contains(github.event.pull_request.labels.*.name, 'run devdeps tests')))
+    uses: OpenAstronomy/github-actions-workflows/.github/workflows/tox.yml@v1
+    with:
+      setenv: |
+        CRDS_PATH: /tmp/data/crds_cache
+        CRDS_CLIENT_RETRY_COUNT: 3
+        CRDS_CLIENT_RETRY_DELAY_SECONDS: 20
+      envs: |
+        - linux: py3-jwst-devdeps-xdist
+        - linux: py3-romancal-devdeps-xdist
+