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JP-3550: Multi-integration jump detection #242

Merged
merged 219 commits into from
Mar 20, 2024
Merged

JP-3550: Multi-integration jump detection #242

merged 219 commits into from
Mar 20, 2024

Commits on May 24, 2022

  1. Merge pull request #1 from spacetelescope/main 

    Get up to date May 24, 2022
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Commits on Jul 9, 2022

  1. Merge pull request #2 from spacetelescope/main 

    update on 7/8/22
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Commits on Aug 22, 2022

  1. Merge pull request #3 from spacetelescope/main 

    getting up to date Aug 22
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Commits on Nov 1, 2022

  1. Merge pull request #4 from spacetelescope/main 

    catch up
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Commits on Dec 20, 2022

  1. Merge branch 'spacetelescope:main' into main

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Commits on Dec 21, 2022

  1. changes for charge spilling from saturated core

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  2. Update jump.py

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Commits on Dec 22, 2022

  1. Update jump.py

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Commits on Jan 3, 2023

  1. Update jump.py

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  2. Update saturation.py

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Commits on Jan 4, 2023

  1. Update saturation.py

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Commits on Jan 5, 2023

  1. use ellipses for all jumps

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  2. Update jump.py

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  3. Update jump.py

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  4. Update jump.py

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  5. Update jump.py

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  6. Update jump.py

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  7. Update jump.py

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  8. Update jump.py

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  9. Update jump.py

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Commits on Jan 6, 2023

  1. Update jump.py

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  2. Update jump.py

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  3. fix sat expand

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  4. fix inside ellipse test

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  5. Update jump.py

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  6. Update jump.py

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  7. Update jump.py

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Commits on Jan 11, 2023

  1. tests etc

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Commits on Jan 12, 2023

  1. return new dgq for sat expend

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  2. fix super expanding ellipses

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Commits on Jan 13, 2023

  1. Update jump.py

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  2. Update jump.py

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  3. wrong shape for edge 

    too many expands due to edge being wrong
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  4. update edge parameter

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Commits on Jan 18, 2023

  1. remore print

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  2. Update saturation.py

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  3. fix miri showers

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Commits on Jan 20, 2023

  1. updates

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  2. Update twopoint_difference.py

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  3. Update twopoint_difference.py

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  4. retro fit sigman_clip

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  5. Update twopoint_difference.py

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  6. Update twopoint_difference.py

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Commits on Feb 6, 2023

  1. updates for test

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  2. Update twopoint_difference.py

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  3. fix multint

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  4. tests

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  5. Update twopoint_difference.py

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  6. fixed axis=1 to axis=0,1

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  7. Update twopoint_difference.py

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  8. Update twopoint_difference.py

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Commits on Feb 7, 2023

  1. Update twopoint_difference.py 

    print statements
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  2. fix flagging 

    fix flagging
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  3. Update jump.py

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  4. Update twopoint_difference.py

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Commits on Feb 8, 2023

  1. type problem

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  2. Update twopoint_difference.py

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  3. Update twopoint_difference.py

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  4. Update twopoint_difference.py

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  5. Update twopoint_difference.py

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  6. Update twopoint_difference.py

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Commits on Mar 27, 2023

  1. Update twopoint_difference.py

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  2. Update twopoint_difference.py

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  3. Update twopoint_difference.py

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  4. Update twopoint_difference.py

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  5. Update twopoint_difference.py

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Commits on Mar 28, 2023

  1. Update twopoint_difference.py

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  2. Update twopoint_difference.py

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  3. Update twopoint_difference.py

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  4. Update twopoint_difference.py

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Commits on Apr 13, 2023

  1. Update twopoint_difference.py

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  2. Update twopoint_difference.py

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  3. test sigma clip

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  4. Update twopoint_difference.py

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  5. Merge branch 'sigma_clip' of https://github.com/mwregan2/stcal into s… 

    …igma_clip
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Commits on Apr 14, 2023

  1. Merge branch 'main' of https://github.com/mwregan2/stcal

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  2. Update jump.py

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  3. Update twopoint_difference.py

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  4. Update twopoint_difference.py

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Commits on Apr 24, 2023

  1. add total CR count

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Commits on Apr 25, 2023

  1. Update twopoint_difference.py

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  4. Update twopoint_difference.py

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  5. Update jump.py

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Commits on Apr 27, 2023

  1. Update jump.py

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  5. Update twopoint_difference.py

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  7. Update jump.py

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Commits on May 25, 2023

  1. Update twopoint_difference.py

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Commits on May 26, 2023

  1. Update twopoint_difference.py

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Commits on May 27, 2023

  1. tests

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  3. lower sig clip thres

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  4. Update twopoint_difference.py

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  5. Merge branch 'main' of https://github.com/mwregan2/stcal

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  6. Update twopoint_difference.py

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  7. Update jump.py

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  8. Update twopoint_difference.py

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  9. Update twopoint_difference.py

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Commits on May 30, 2023

  1. group diffs

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  2. Update jump.py

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Commits on May 31, 2023

  1. Update test_twopoint_difference.py

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  2. Update twopoint_difference.py

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  3. updates

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  4. updates

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  5. new test

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  6. Update twopoint_difference.py

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  1. change to nints for min groups

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  1. fixes

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  1. Update twopoint_difference.py

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  1. update

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  1. update

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  3. cleanup

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  1. remove fits

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  2. add stddev output

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  3. updates

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  4. test updates

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  1. Merge branch 'main' of https://github.com/mwregan2/stcal

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  2. Reduce log output

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  9. Update test_twopoint_difference.py

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  1. Add sigma clip to shower detection

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  2. remove or mark as skip extraneous tests

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  3. remove ds_store

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  4. remove DS_Store

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  5. Delete .DS_Store

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  6. Delete .DS_Store

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  7. Update CHANGES.rst

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  8. unpacked the use of shape to be named variables

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  9. replacing shape with meaningful variable names

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  1. fix style issues

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  2. Update test_twopoint_difference.py

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  1. Merge branch 'main' into sigma_clip

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  2. Delete setup.cfg

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Commits on Jun 22, 2023

  1. Fix missing loop in flag 4 neighbors 

    I added a loop over integrations that was missing due to the post CR flagging being done once for all ints.
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  2. Merge branch 'sigma_clip' of https://github.com/mwregan2/stcal into s… 

    …igma_clip
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  1. Update twopoint_difference.py 

    Remove loop over integrations and use where to get integration.
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  2. Update CHANGES.rst

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  3. Update CHANGES.rst

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  4. Update src/stcal/jump/jump.py

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  5. Update src/stcal/jump/jump.py

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  6. Merge branch 'main' into sigma_clip

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  1. Update twopoint_difference.py 

    Resolve comments on PR.
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  1. Merge branch 'spacetelescope:main' into main

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  1. Merge branch 'spacetelescope:main' into main

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  1. Update twopoint_difference.py

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  1. Merge branch 'main' of https://github.com/mwregan2/stcal

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  1. Merge branch 'main' of https://github.com/mwregan2/stcal

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  1. Update twopoint_difference.py

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  1. Merge branch 'main' of https://github.com/mwregan2/stcal

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  1. updates

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  1. Update twopoint_difference.py

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  3. update tests

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  4. updates

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  1. Update twopoint_difference.py

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  1. update

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  1. Update twopoint_difference.py

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  2. Update twopoint_difference.py

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  1. updates

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  1. resolve conflict

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  2. conflicts

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  1. Update twopoint_difference.py

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  3. Update jump.py

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  4. fix clipping

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  5. Update twopoint_difference.py

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  6. new output

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  1. unit test updates

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  1. Update test_twopoint_difference.py

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  2. Cleanup

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  3. Update test_twopoint_difference.py

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  4. Update CHANGES.rst

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  5. Update CHANGES.rst

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  6. Merge branch 'main' into multi_int_jump_detection

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  1. update variable name and parameter docs

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  2. Merge branch 'multi_int_jump_detection' of https://github.com/mwregan… 

    …2/stcal into multi_int_jump_detection
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  1. Update .gitignore

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  2. Update twopoint_difference.py

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  3. Update twopoint_difference.py

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  4. Update test_twopoint_difference.py

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  5. clean up flag after

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  6. Update test_twopoint_difference.py

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  7. fix merge problems

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Commits on Feb 27, 2024

  1. Update jump.py

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  1. add test from JWST

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  2. change threshold flagging back to scalar

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  3. make sure copies are made of model attributes

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  1. Update test_jump.py

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  2. Update test_jump.py

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  3. Update test_twopoint_difference.py

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  4. Update test_twopoint_difference.py

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  5. Merge branch 'spacetelescope:main' into multi_int_jump_detection

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  1. Update CHANGES.rst

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  2. Merge branch 'main' into multi_int_jump_detection

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Commits on Mar 19, 2024

  1. addressed PR comments

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