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remove some of the listed dependancies
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hyphaltip committed Sep 13, 2018
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5 changes: 1 addition & 4 deletions README.md
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Expand Up @@ -6,13 +6,10 @@ Requirements
- SPAdes - http://cab.spbu.ru/software/spades/
- Trimmomatic - http://www.usadellab.org/cms/?page=trimmomatic
- bowtie2 - http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
- bwa - https://github.com/lh3/bwa
- Pilon - https://github.com/broadinstitute/pilon/wiki
- BlobTools - https://blobtools.readme.io/ or https://github.com/DRL/blobtools
- sourmash - https://sourmash.readthedocs.io/ (install via conda/pip)
- NCBI BLAST+ - ftp://ftp.ncbi.nlm.nih.gov/blast/executables/LATEST/
- bwa - https://github.com/lh3/bwa
- BUSCO - https://busco.ezlab.org/
- funannotate - https://github.com/nextgenusfs/funannotate
- minimap2 - https://github.com/lh3/minimap2

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