use shutil.copy instead of rename to support cross filesystems

stajichlab · Jan 28, 2022 · b78d9f5 · b78d9f5
1 parent 6874494
commit b78d9f5
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/AAFTF/sourpurge.py b/AAFTF/sourpurge.py
@@ -221,7 +221,7 @@ def run(parser,args):
         if '.' in baseinput:
             baseinput = baseinput.rsplit('.',1)[0]
 
-        os.rename(sourmashTSV, baseinput+'.sourmash-taxonomy.csv')
+        shutil.copy(sourmashTSV, baseinput+'.sourmash-taxonomy.csv')
 
     if not args.debug:
         SafeRemove(args.workdir)