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AAFTF release v0.2.0
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@hyphaltip hyphaltip released this 28 Nov 06:59
v0.2.0
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Learn about vigilant mode.

This release reworks the workdir concept, requires specification of file prefix, and switches to BBTools bbduk for trimming and filtering instead for performance and accuracy improvements.

New command 'pipeline' will generate commands of all steps at once to support pipelining.

This version has been stably run on several hundred fungal genomes in testing and production. Some memory usage tweaking has to be made (see --mem for assembly and filter steps) depending on depth of coverage and genome size.

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