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Release v0.4.0

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@hyphaltip hyphaltip released this 15 Dec 06:08
· 46 commits to main since this release
7dcafe4

In this release we now report number of Telomeres recovered from Contigs in the assess sub-tool. Default monomer TAA[C]+ is searched but custom regex can be passed in. assess can also take gzip compressed FastA files as input without needing to uncompress the file.

Example assess report now looks like this after running AAFTF assess -i genome.fasta:

   CONTIG COUNT  =  189
   TOTAL LENGTH  =  19885575
            MIN  =  506
            MAX  =  1594688
         MEDIAN  =  4971
           MEAN  =  105214.68
            L50  =  12
            N50  =  536033
            L90  =  45
            N90  =  93073
            GC%  =  60.57
  T2T SCAFFOLDS  =  1
   TELOMERE FWD  =  7
   TELOMERE REV  =  17