Release v0.4.0
In this release we now report number of Telomeres recovered from Contigs in the assess
sub-tool. Default monomer TAA[C]+ is searched but custom regex can be passed in. assess
can also take gzip compressed FastA files as input without needing to uncompress the file.
Example assess report now looks like this after running AAFTF assess -i genome.fasta
:
CONTIG COUNT = 189
TOTAL LENGTH = 19885575
MIN = 506
MAX = 1594688
MEDIAN = 4971
MEAN = 105214.68
L50 = 12
N50 = 536033
L90 = 45
N90 = 93073
GC% = 60.57
T2T SCAFFOLDS = 1
TELOMERE FWD = 7
TELOMERE REV = 17