Nectriaceae genomes project with Matt Kasson lab (WVU) and Jason Stajich with collaborators.
This archives the pipeline scripts for assembly using AAFTF and funannotate. The log files from the runs are part of the archive and genome size estimates and BUSCO results. See the samples.csv file for info on the samples and asm_stats.tsv for summary statistics.
Only strains/samples with sufficient sequencing depth and quality were carried forward in the analysis.
Citation: Petronek HM, Kasson MT, Metheny AM, Stauder CM, Lovett B, Lynch SC, Kasson LR, Stajich JE. Draft Genome Resources for Neonectria magnoliae and Neonectria punicea, Canker Pathogens of Liriodendron tulipifera and Acer saccharum. Microbial Resource Annoucements: In Revision.
DOI for this data and pipeline code archive and annotation: 10.5281/zenodo.13787582.