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@mktrost mktrost released this 20 Feb 15:47
· 55 commits to master since this release
v1.0.13
93b087e

BamUtil Version 1.0.13 - Released 2/20/2015

  • https://github.com/statgen/bamUtil/archive/v1.0.13.tar.gz
  • Requires, but does not include: libStatGen version 1.0.13
  • Makefule Updates
    • Improve logic to determine actual path for the library
    • Update to append to USER_COMPILE_VARS even if specified on the command line
  • Update writeRegion
    • Add option to specify readnames to keep in a file
    • Fixed bug that if a read overlapped 2 BED positions, it was printed twice
  • Update to bam2FastQ
    • Update to skip non-primary reads
  • Update to polishBam
    • Update to handle '\t' string inputs and to add CO option
    • Fix MD5sum calculation to convert fasta to uppercase prior to calculating
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