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Old Release for SBS1-SBS5-Testing-Paper and Nature-Paper (Please use 1.0.6)
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@WuyangFF95 WuyangFF95 released this 24 Dec 02:46
1.0.5-release
4828472

Simplified

  • Simplified folder structure of SBS1-SBS5-correlated dataset,
    generated by CreateSBS1SBS5CorrelatedSyntheticData() -
    The files of synthetic datasets are under the dataset folders, and no more
    sp.sp folders.

The citation of Nature paper is listed below:

Alexandrov, L.B., Kim, J., Haradhvala, N.J. et al. The repertoire of mutational signatures in human cancer. Nature 578, 94–101 (2020). https://doi.org/10.1038/s41586-020-1943-3

The evaluation of signature extraction tools on SBS1-SBS5 datasets is currently accepted by Scientific Reports.

Please use release 1.0.6 instead of this release, as version 1.0.5 will fail test test-AddNoise.R after user upgrades one dependency package, PCAWG7. The new PCAWG7 package no more uses COSMIC v3.0 signatures as default signature set.

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