FSL-bash-scripts

For making FSL processing a bit easier.

• REG_check for checking the registration from functional to anatomical and standard
• COPE_check for checking any activation for each dataset (targets are the .feat directories)

Scripts for converting files

• dos2mac to convert dos generated .txt file to Osx compatible file
• unix2mac to convert Unix generated .txt file to Osx compatible file
• dos2unix to convert dos generated .txt file to Unix compatible file
• mac2unix to convert Osx generated .txt file to Unix compatible file

Python scripts for processing in FSL.

FSL 7T BIDS fMRI processing script

• BIDS_fmri_preproc.sh (note; needs editing)