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St. Jude Children's Research Hospital

Finding Cures, Saving Children.

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  1. learngenomics.dev learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 363 33

  2. ROSE ROSE Public

    ROSE: RANK ORDERING OF SUPER-ENHANCERS

    Python 45 12

  3. CICERO CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 37 21

  4. ChIPseqSpikeInFree ChIPseqSpikeInFree Public

    A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

    R 31 13

  5. proteinpaint proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    JavaScript 26 8

  6. RNAIndel RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 21 9

Repositories

Showing 10 of 46 repositories
  • proteinpaint Public

    Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

    JavaScript 26 8 109 (1 issue needs help) 7 Updated Mar 20, 2025
  • fuzzion2_patgen Public

    tools for creating patterns for use with fuzzion2

    Perl 0 Apache-2.0 0 0 0 Updated Feb 19, 2025
  • fuzzion2 Public

    fuzzy fusion finder

    HTML 6 Apache-2.0 2 0 0 Updated Feb 14, 2025
  • CICERO Public

    CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

    Perl 37 21 7 0 Updated Jan 7, 2025
  • RNAIndel Public

    Somatic indel discovery tool for tumor RNA-Seq data.

    Python 21 Apache-2.0 9 0 0 Updated Jan 7, 2025
  • seaseq Public

    Abraham's lab - ChipSeq Pipeline

    WDL 6 Apache-2.0 5 0 0 Updated Dec 2, 2024
  • XenoCP Public

    A cloud-based tool for mouse read cleansing in xenograft samples

    Shell 5 Apache-2.0 3 0 1 Updated Nov 1, 2024
  • Jupyter Notebook 0 MIT 1 1 0 Updated Sep 13, 2024
  • learngenomics.dev Public

    A guided, intuitive introduction to genomics for software engineers. Curated by the community.

    JavaScript 363 33 7 6 Updated Aug 25, 2024
  • RNApeg Public

    RNA junction finder

    Perl 3 Apache-2.0 2 2 0 Updated Aug 22, 2024